| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA2616 |
|---|
| Symbol | |
|---|
| ID | 3104547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | + |
|---|
| Start bp | 2803864 |
|---|
| End bp | 2804625 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637171750 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_115020 |
|---|
| Protein GI | 53803239 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCCGT TGCGTGACAT CAACCCGGCC CTGCACCGCC CCATCGCCGT CATGCTGATC
CTGCTGGTCA ACGCCGGCGC CTGGACGCTG GTGCAGGGAT TCGGACAGGA TCTGCCGCTG
GCTCGATCGC TTTGCGAGTA CGCGCTCATT CCCGGAGAAT TGCTCGGGCT GGCGCCGGTC
GGCACCGTGA TCCCGGTCAG CCCGAATTTC GCCTGTCAGC TCGAAGGCGA TGCATCGGCT
TGGACCCTGG TCACCCATAT GTTCCTGCAC GGCGGCTGGT TCCACATCAT CGGCAACATG
TGGTTTCTGT GGGTGTTCGG CGACAACGTG GAAGACGCGA TGGGACCGCT GCGCTTCGTC
GCCTTTTATG TGCTGTGCGG CCTGGCGGCG GCGGCGGCGC AGATCGCCTC CGACCCGGGC
GCCGCCGTGC CGATGGTTGG CGCTTCCGGC GCCATCGGCG GCGTCATGGG CGCCTACGCC
CGCCTCTACC CCCGCACCCA GGTCATCACG CTGATCTTCC TGGGCTTCTA CTGGACTACC
GTCGCCATCC CGGCCTTCGC CATGCTCGGC TACTGGTTTT TCATCCAGCT CATCAGCGGC
CTGCCCGCCC TCGGCAGCGC CAGCGGCGGG GTGGCGTTCT GGGCCCATGT CGGCGGTTTC
CTGGCCGGCG TCCTTCTAAT CGGACCCATG CACCGGCCGG ATTATCTCAT CCGGCGGGCT
CAGCAGATGG AACGCAGATT TTTCGACTCA AGGCATTTCT GA
|
|---|
| Protein sequence | MFPLRDINPA LHRPIAVMLI LLVNAGAWTL VQGFGQDLPL ARSLCEYALI PGELLGLAPV
GTVIPVSPNF ACQLEGDASA WTLVTHMFLH GGWFHIIGNM WFLWVFGDNV EDAMGPLRFV
AFYVLCGLAA AAAQIASDPG AAVPMVGASG AIGGVMGAYA RLYPRTQVIT LIFLGFYWTT
VAIPAFAMLG YWFFIQLISG LPALGSASGG VAFWAHVGGF LAGVLLIGPM HRPDYLIRRA
QQMERRFFDS RHF
|
|---|
| |