Gene MCA2519 details

Gene Information

• Locus tag: MCA2519
• Symbol: truD
• ID: 3103594
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: +
• Start bp: 2695884
• End bp: 2696948
• Gene Length: 1065 bp
• Protein Length: 354 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637171660
• Product: tRNA pseudouridine synthase D
• Protein accession: YP_114930
• Protein GI: 53803273
• COG category: [S] Function unknown
• COG ID: [COG0585] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR00094] tRNA pseudouridine synthase, TruD family

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGGAC ATCCCGACTG CCCCGGATTC GACGATCTGC CGCGGGCACA CGGCGAAGTG 
ACCTGCCGCG GCCGCATCCG GGTCTCTCCG GAAGACTTCC GGGTCGACGA AATCCTCGGC 
TTCGAACCCA CCGGCCAGGG CGAGCACGCC TTCCTGCACA TCCGTAAGAC CGGGGAGAAC 
ACCGACCACG TGGCACAGCG GATCGCCAGG CTGGCCGGCG TCAAGCCGAT GGACGTGGGC 
TATGCCGGCC TCAAGGACCG CCACGCCGTC ACCACCCAGT GGTTCAGCGT GAGACTGGCC 
GGCAAGGCCG ATCCCGACTG GAGGGCGCTG GAAAGCGAGA GCATCGCCGT CCTGCGCCAT 
ACCCGGCACG ACCGCAAACT CAAGCGTGGC GCCCTGGCAG GAAACCGCTT CCGCATCATC 
CTACGGGGAC TCGAAGGTGT GTGCGACGGT CTGGAAGCCC GCTGCGCGGC GATCCGCGCG 
GCCGGCGTGC CGAACTATTT CGGCCCGCAG CGCTTCGGCC ACGGAGGCCG CAATCTGCAG 
GAAGCACTGC GGCTGTTCGC CGACCCGCGC CGCCGTATCG ACCGCAACAA GCGCTCGCTG 
TACCTGTCGG CGGCACGTTC CTATCTGTTC AACCGTGTCC TCGCCGGTCG GGTGGAGCAC 
GGCAGCTGGA ACCGGGGAGT GGAGGGCGAC GCTTTCATGT TCACCGGCTC CAACGCCTTC 
TTCAAGACCG ACAAGTTGGA TGAAGACATC CAGCGACGCG TCGAAGCGCT GACGATCCAC 
CCCAGCGGAA CCCTTTGGGG AAGGGGCGAC CCGGTGATTT CCGGCACGGC CCTCGCAATG 
GAGCGGGTGG CGCTGGCACA ATGCGCGGAA TTCCGCGAGG GTCTGGAACG CTGCGGGCTC 
GAAGTCGGCC GGCGGGCGCT GCGACTGCCG GTACCGGATC TCGAATTCGC GGGAGTCGAG 
GATTCGGCCT GCGAACTGAC GTTTTCCCTC CCTGCCGGCA CCTATGCGAC CACGGTCTTG 
CGGGAACTCG TCGAATTCGA CCCGCAAGGC TGGCCGGACA CCTGA 

 

Protein sequence

MTGHPDCPGF DDLPRAHGEV TCRGRIRVSP EDFRVDEILG FEPTGQGEHA FLHIRKTGEN 
TDHVAQRIAR LAGVKPMDVG YAGLKDRHAV TTQWFSVRLA GKADPDWRAL ESESIAVLRH 
TRHDRKLKRG ALAGNRFRII LRGLEGVCDG LEARCAAIRA AGVPNYFGPQ RFGHGGRNLQ 
EALRLFADPR RRIDRNKRSL YLSAARSYLF NRVLAGRVEH GSWNRGVEGD AFMFTGSNAF 
FKTDKLDEDI QRRVEALTIH PSGTLWGRGD PVISGTALAM ERVALAQCAE FREGLERCGL 
EVGRRALRLP VPDLEFAGVE DSACELTFSL PAGTYATTVL RELVEFDPQG WPDT