Gene MCA2438 details

Gene Information

• Locus tag: MCA2438
• Symbol: ligA
• ID: 3104066
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: -
• Start bp: 2616921
• End bp: 2618942
• Gene Length: 2022 bp
• Protein Length: 673 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637171581
• Product: DNA ligase, NAD-dependent
• Protein accession: YP_114852
• Protein GI: 53803401
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCGTTC CTGCCGAAGT GGTCGAAAAA GCCCGCAAAC TGCGCGAAGA AATCGAGTTT 
CATAACGTTC GTTACTACCG GCTCGACGAT CCCCTGATCA CCGACGCCGA ATACGACCGC 
CTGATGGCGG AACTGCTTGC CATCGAGGCC CGTTATCCCG AGCTCGTCAC ACCCGATTCG 
CCCACCCAAC GGGTAGGCGC TCCTCCGGTC GAAGCTTTCA CTGAGGTTCG CCACGAAGTG 
CCCATGCTGT CGCTGGAGAA TGCTTTCAGT GAGGAGGATC TCACCGCATT CGACCGGCGG 
GTACGCAAGG AGCTGTCCCG GGATACGCTC GAATACGTCG CGGAGCCGAA GCTCGACGGG 
CTCGCCGTCA ATTTGCTCTA CCAGGACGGC GTTCTGGTCC GAGCCGCCAC CCGCGGTGAC 
GGGGAAGTCG GGGAGGATGT GACGCACAAC GTCCGGGCGG TTCGGGCGAT CCCTCTGCGG 
CTAAAGGGCG AAGACTTTCC GGACCGTTTC GAGGCGCGGG GTGAAGTGTT CATGCCCAAA 
CGGGGCTTTC TCGCCCTCAA CGAGCGCGCC CGCCGCAGCG GAGAGAAAAC GTTCGTGAAT 
CCGCGCAACG CCGCGGCGGG CAGCCTGCGC CAGCTCGACG CGAGGGTCAC GGCGTCGCGT 
CCCTTGTCCT TTTACGCCTA TGGTATTGGG GCGTTTCCGG ACGCCAGACT CCCCGCCACC 
CAGCATGAAC TCCTCGAATC CCTGCAACGC TGGGGGTTGC CGGTTTCGCC GGAGTATCGC 
GTCGTTCGGG GAGCAGCCGG TTGTCTTGAG TACTATCGCT CGCTGGGGGA GCGCCGTCAC 
GATCTGCCGT ACGATATCGA CGGCGTCGTA TACAAGGTCG ACGACCTGAA GGCCCAGGCC 
GGGCTGGGAT TCGTCTCGCG CGCCCCCCGC TGGGCCATCG CCCACAAGTT TCCCGCCGAG 
GAGGCGAGAA CGCGGGTCGT GGGCATCGAC GTCCAGGTGG GACGTACCGG CGTCCTGACT 
CCCGTGGCAA GGCTGGAACC GGTGTTCGTT GGCGGGGTCA CCGTCACTAA CGCGACCCTG 
CACAATGCCG ACGAGATCCG CAGGAAGGAC GTCCGGCCCG GGGACACCGT GATCGTGAGG 
CGGGCCGGGG ACGTCATTCC AGAAATCGTC CGGGTCGTTC CGGAACTGCG GAAGCCGGGG 
GCCGAACCGT TTCGGATGCC GGAAGTTTGT CCCGAATGCG GCTCCGCCGT AGAGGCGGAA 
CCGGGCGAGG TGTTGGCCCG CTGCAGCGGT GGCCTGTACT GTCCTGCCCA GCACAAAGAG 
TCGATCAAGC ACTTCGCGTC CCGGCGGGCG ATGGATATCG AAGGGCTGGG CGACAAACTG 
GTCGATCAGC TGGTGGGCAG AAAGCTGATC GCAACGGTGG CTGACCTTTA CCGCCTCGAT 
CTGGACCGGC TTGCGGGGCT GGACCGGATG GGGGAGAAAT CCGCCGCCAA TCTGCTGGCT 
GCGTTGGAGC GCAGCAAGCG CACCACGCTG GCGCGCTTCC TTTATGCGCT GGGCATCCGC 
GATGTGGGCG AGGTGACGGC CAAGGTACTT TCGGAGCATT TCGGTTCCCT CGAGGCGTTG 
ATGGAGGCTA CCGAAGAAGA GCTTCTGGCC GTTGCCGATG TCGGCCCGGT GGTGAGCCGC 
CACATCCGGC TGTTTTTCGC TCAGCCTCAC AACCGCGAGG TGATCTCGCA ACTGCTGGCG 
TGCGGCGTAA GCTGGGAGAA GCCGGCGCCG GCACCGAGGA AGCTGCCGCT GCAGGGGCTG 
GTTTTCGTGC TCACCGGCAC GTTGGCCTCG ATGAGCCGGG ACGAAGCGCG AGCCCGGCTC 
GAAGCTCTCG GGGCGAAATG CACCGGCAGC GTCTCCAGGA ACACCAGTTT CGTCGTTGCC 
GGTTCGGAAC CGGGTTCGAA ACTGGACAAA GCCTCCGAAC TCGGCGTCCC GGTGTTGGAC 
GAGAAGGGCT TCCTAGATCT GCTTGAGCGG GGGCGGCCGT AA 

 

Protein sequence

MSVPAEVVEK ARKLREEIEF HNVRYYRLDD PLITDAEYDR LMAELLAIEA RYPELVTPDS 
PTQRVGAPPV EAFTEVRHEV PMLSLENAFS EEDLTAFDRR VRKELSRDTL EYVAEPKLDG 
LAVNLLYQDG VLVRAATRGD GEVGEDVTHN VRAVRAIPLR LKGEDFPDRF EARGEVFMPK 
RGFLALNERA RRSGEKTFVN PRNAAAGSLR QLDARVTASR PLSFYAYGIG AFPDARLPAT 
QHELLESLQR WGLPVSPEYR VVRGAAGCLE YYRSLGERRH DLPYDIDGVV YKVDDLKAQA 
GLGFVSRAPR WAIAHKFPAE EARTRVVGID VQVGRTGVLT PVARLEPVFV GGVTVTNATL 
HNADEIRRKD VRPGDTVIVR RAGDVIPEIV RVVPELRKPG AEPFRMPEVC PECGSAVEAE 
PGEVLARCSG GLYCPAQHKE SIKHFASRRA MDIEGLGDKL VDQLVGRKLI ATVADLYRLD 
LDRLAGLDRM GEKSAANLLA ALERSKRTTL ARFLYALGIR DVGEVTAKVL SEHFGSLEAL 
MEATEEELLA VADVGPVVSR HIRLFFAQPH NREVISQLLA CGVSWEKPAP APRKLPLQGL 
VFVLTGTLAS MSRDEARARL EALGAKCTGS VSRNTSFVVA GSEPGSKLDK ASELGVPVLD 
EKGFLDLLER GRP