Gene MCA2378 details

Gene Information

• Locus tag: MCA2378
• Symbol: rnd
• ID: 3102657
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: +
• Start bp: 2558241
• End bp: 2559407
• Gene Length: 1167 bp
• Protein Length: 388 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637171523
• Product: ribonuclease D
• Protein accession: YP_114794
• Protein GI: 53803525
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0349] Ribonuclease D
• TIGRFAM ID: [TIGR01388] ribonuclease D

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0306951
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTGCAA CCATGCCCCC GCCCATCAAC TATATCGACT CACCCGCCGA GCTTGCGGCA 
TTCTGCCGGT CCATCGGTGG TTCTCCCTGG ATCGCAGTCG ATACCGAATT CATGCGTGAC 
AAGACTTATT ATCCGAAGTT CTGCCTGCTC CAGATTGCCA ATGGCACTCA GGCCGCCTGC 
ATCGATCCCC TCGCCATCGA GGATCTGCGG GAAGTCGAGT GTCTGCTGTT CAATCGGGCG 
ATCACCAAGG TGTTTCATGC CGCGAGACAG GATCTGGAGA TTTTCTTCCA CCGATTCCGG 
GCCGTCCCAG CGCCGATATT CGACACCCAA CTGGCAGCCC CCCTGGTCGG CCATCCCGAG 
CAAGTTGGCT ATGCCAGCCT CGTATCGGCC ATGCTTGGAG TGACTGTCGA CAAGGAGCAC 
ACCCGCACCG ATTGGAGCCA GCGTCCTCTC TCGGCCGCCC AGAAGGAATA CGCGGCCAAC 
GACGTGATCC ACCTCGCGGC CCTGTATCCG AGGATGCGGG AACAACTGGA ACGGCTGGGA 
CGCTATGCCT GGCTGGTGGA CGAGTTCGCG GCGCTGGAGG AGCCAGACCT CTACGTAAAC 
CGTCCGGAGG ACGCGTGGCA GCGCATCGGC GGGCTGGACC GCCTGAAACC CGAGCAGTTC 
GCGTTGGCAG TCCGCCTCGC CGCCTGGCGG GAGAACACCG CCCAGCAGAA CGATCTGCCG 
CGCAACTGGA TACTTCGCGA CGAGGCCCTG CTGGAGATCG CGCTGAGAAG ACCCCGTAAC 
CGGGATGCTC TGCAAGCTCT GAGAGGAATC GATTCGCGCA TGGTACAGCG ATACGGCGAT 
GCGATGATCG CCCTCGTACA GGACGCCGGG AGTGGCCAGG CCGTGCCGCC ACAACCCCGC 
CGGGGTCAGC GCCGCAGCGC TCAGACCGAG GCCATCCTCG ATGCGATGTC GGCCCTCGTC 
CGCCTGCGCT GCATCGAGCA CACCATCAAC CCCGCCGTCG TGGCCAGCCG CAAGGATCTC 
GAAGAGCTGC TGGAATCGCC CGACGGCGCC AAAGTCCTGC ACGGATGGCG GCGCGCCCTG 
GTGGGAAATG ACCTGCGAGC TTTTCTGGCG GGGAAGGCGA TGCTGCGCAC GAAGGGCGGC 
CGACTCACAT TCGACGACTG TGAATAA 

 

Protein sequence

MPATMPPPIN YIDSPAELAA FCRSIGGSPW IAVDTEFMRD KTYYPKFCLL QIANGTQAAC 
IDPLAIEDLR EVECLLFNRA ITKVFHAARQ DLEIFFHRFR AVPAPIFDTQ LAAPLVGHPE 
QVGYASLVSA MLGVTVDKEH TRTDWSQRPL SAAQKEYAAN DVIHLAALYP RMREQLERLG 
RYAWLVDEFA ALEEPDLYVN RPEDAWQRIG GLDRLKPEQF ALAVRLAAWR ENTAQQNDLP 
RNWILRDEAL LEIALRRPRN RDALQALRGI DSRMVQRYGD AMIALVQDAG SGQAVPPQPR 
RGQRRSAQTE AILDAMSALV RLRCIEHTIN PAVVASRKDL EELLESPDGA KVLHGWRRAL 
VGNDLRAFLA GKAMLRTKGG RLTFDDCE