Gene MCA2348 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMCA2348 
SymbolrpsD 
ID3103674 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylococcus capsulatus str. Bath 
KingdomBacteria 
Replicon accessionNC_002977 
Strand
Start bp2541472 
End bp2542092 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content58% 
IMG OID637171491 
Product30S ribosomal protein S4 
Protein accessionYP_114764 
Protein GI53803440 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAGAT ATCTGGGCCC GAAATGCAAG TTGAGCCGCC GCGAGGGGAC TGACCTGTTT 
CTCAAGTCGA GGGGCAAGTC CCTGGAATCG AAATGTAAGC TGGATCAGCC GCCCGGGCAG
CACGGCCAGA AGCGGCCGCG GCTGAGTGAT TACGCGGCCC AGCTTCGGGA GAAGCAGAAG
CTGCGGCGGA TTTACGGCAT CATGGAGCGG CAGTTTCGCA ATTATTATGC CGAGGCTTCC
CGGCGGAAAG GCTCCACGGG CGAAAACCTG CTGACACTGC TGGAATCGCG TCTCGACAAC
GTGGTCTATC GCATGGGGTT CGCCTCAACA CGCGCCGAGG CGCGCCAACT CGTATCGCAC
AAAGCGATCA ATCTGAACGG GCGGACGCTT AACATACCTT CATACCAGGT GCAAAGCGGG
GACGTCGTCG AGATTCGGGA TAAGGCTAAA TCTCAGGGCC GCGTCAAGGA CGCGCTGCAG
GTCACCGAGC AGTACGGCTT TCCGTCTTGG GTGGACGTCG ACGTCAAGTC GATGAAAGGC
ATTTTCAAAT CGGCACCGGA AAGGAGTGAG CTGGGCTCGG ACATCAACGA GCAGCTGGTC
GTTGAGCTGT ATTCGAAATA G
 
Protein sequence
MARYLGPKCK LSRREGTDLF LKSRGKSLES KCKLDQPPGQ HGQKRPRLSD YAAQLREKQK 
LRRIYGIMER QFRNYYAEAS RRKGSTGENL LTLLESRLDN VVYRMGFAST RAEARQLVSH
KAINLNGRTL NIPSYQVQSG DVVEIRDKAK SQGRVKDALQ VTEQYGFPSW VDVDVKSMKG
IFKSAPERSE LGSDINEQLV VELYSK