Gene MCA2347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMCA2347 
SymbolrpoA 
ID3103602 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylococcus capsulatus str. Bath 
KingdomBacteria 
Replicon accessionNC_002977 
Strand- 
Start bp2540462 
End bp2541448 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content58% 
IMG OID637171490 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_114763 
Protein GI53803448 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACAACT CGCTTGCCGA GCTGATCAAG CCGCGTACGG TGGAGGTGGT TCCCCACGGA 
AGCCATTCCG CACGTGTGGT CATCGAACCG CTAGAGCGGG GGTTCGGACA CACCCTAGGC 
AACGCCTTGA GACGCGTGCT TCTTTCTGCC ATTCCCGGTG CGGCGGTCAC GGACGTCGTC 
ATCGACGGCG TGCTGCACGA ATATTCGACC ATCGAGGGGG TTCAGGAGGA TGTCATCGAC 
GTGCTTCTGA ATCTCAAGAA TCTCGCCATC CGTTTGAACG GGCCACATGA CGTTTACCTC 
AATGTCGATA AGCACGGCCC CGGTCCGGTT CTGGCAGGCG ACATCGAGGC GTCCCATGAC 
GTCGAAGTGC TCAATCCGGA ATTGCTGATA GCCCACATCA ACGGGAACGG CCGGCTGCGC 
ATGACCCTCC ACGTCCAGAA GGGAAGAGGC TATCAGCCCG TCGCCAACCG TGCCATCGAG 
GGTGATTCGG CCATCGGCAC GTTGCATTTG GACGCGAGTT TCAGTCCCAT AAAAAAGGTG 
TCCTACGTCG TCGAGAGTGC GCGCGTCGAG CAGCGTACCG ACCTGGACCG GTTGGTTATC 
GAGTTGCAGA CCAATGGGAC CGTGCAGCCG GAAGAGGCGG TCAAACACGC CGCCAACATT 
CTGAACCAGC ATCTTGCTAT CCTGGTCGAC CTGAAGGGCG AGGATCTGCC GCTTTTCGGT 
GAGGATGGGC CCCAGTTCGA TCCCTTGCTA CTCCATCCTG TAGACGATCT CGAACTCACG 
GTGCGTTCGG CGAATTGCCT GAAGGCCGAG AACATTTTCT ATATCGGGGA TCTTATCCAG 
CGCAGCGAGG CAGACTTGCT CAAGACTCCC AATTTGGGGA AAAAATCTCT TACCGAGATC 
AAGGACGTGT TGGCGACCAA GGGATTGTCG CTCGGCATGC GTTTGGAGAA CTGGCCGCCG 
GAAGGCCTTA AGAAGCTGAA CCAATAG
 
Protein sequence
MHNSLAELIK PRTVEVVPHG SHSARVVIEP LERGFGHTLG NALRRVLLSA IPGAAVTDVV 
IDGVLHEYST IEGVQEDVID VLLNLKNLAI RLNGPHDVYL NVDKHGPGPV LAGDIEASHD 
VEVLNPELLI AHINGNGRLR MTLHVQKGRG YQPVANRAIE GDSAIGTLHL DASFSPIKKV 
SYVVESARVE QRTDLDRLVI ELQTNGTVQP EEAVKHAANI LNQHLAILVD LKGEDLPLFG 
EDGPQFDPLL LHPVDDLELT VRSANCLKAE NIFYIGDLIQ RSEADLLKTP NLGKKSLTEI 
KDVLATKGLS LGMRLENWPP EGLKKLNQ