Gene MCA1898 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMCA1898 
SymbolrumA 
ID3104939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylococcus capsulatus str. Bath 
KingdomBacteria 
Replicon accessionNC_002977 
Strand
Start bp2044378 
End bp2045709 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content65% 
IMG OID637171055 
Product23S rRNA (uracil-5-)-methyltransferase RumA 
Protein accessionYP_114333 
Protein GI53803775 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.75216 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTCATC GAGGCAAAAG AAAGCCGCTG CCGGCCGAGC CGATCGCAGC GCACATCGAA 
TCTTTCGCCC ACGACGGCAA GGGGATCGCC CACGTCGACG GCCGGGTGGT GTTCGTCGAT
GGCGCTTTGC CGGGCGAAGA CGTCACTTTC GTCTATACCG AAATCAAGCG TGACTACGCC
GCCGGGCGGG TGGTGGAGAT CGTCACGGCC TCGCCCGACC GGGTGCCGGC GCGTTGCCGG
CATTTCGCCC TGTGCGGAGG CTGCAGTCTG CAATATCTGT CCGAAGATGC CCAGATCGCC
CTGAAGGAAG ATCTGCTGCT GGATCAATTC CGCCGTATCG GCAAGGTCGA ACCGGCGGCT
CAGTTCCCGC CGCTGCGGGG ACCGCACTGG GGTTATCGCA GCCGGGCCAG GCTCGGGGCG
CGCTACGTGG CCAAGAAGGG CAGGGAGCTG GTGGGATTCC GCGAACACGC GAGCGCCAAG
ATCGTGGACA TGACCGATTG TCCCGTGCTG CATCCGGCGT TGGGGGAGCG CATCCAGGCC
TTTGCCGAGT TGATCGAGGG TCTTTCGCTG CGGGAACGGC TGCCACAGAT CGAGGCGGCG
GTCGGCGAGG AGCGCACGGC GCTGGTGTTC CGGGTGCTGG AGGATCCGAC CGCCGAGGAT
TTCGCCAGAC TGGCTCGGTT TGGCAAAGAC CAGGGTCTGG ACGTCTACAT CCAGCGGGAA
GGGCGCGACT CGGTCGCTCC GGTCTATCCG GAGACCGCAC ACGACCTGAG CTACAGCCTT
CCGGAATGGG AAGTGACCTT CCGCTTCGGT CCCCTGGATT TCACCCAGGT CAACATGGCG
ATCAACCGCC AGATGATCGA CCAGGTCATG CAGGCGCTCG ATCCCCAGCC GGAGGAACGC
GTGCTCGATC TGTTCTGCGG CCTGGGAAAC TTCACCTTGC CGTTGGCGCG CCGCGCCGGC
CACGTCACCG GCGTGGAGGG AGGCGCGGAA GCGGTCGCGC GGGCGATCCG GAATGCGGCG
GACAACGGTA TCGGCAACGT CGAATTCCAC GTTGCCGACC TGTCGAAGCC GGAAAGTTGC
GGTTCCTGGG CCGGCCGGGA ATACCACAAG GTGCTGCTCG ATCCCTCTCG CTCCGGCGCC
CTGGAAATCC TCCAGTGCGT GCCGAACTGG AAAGCCGGGC GCATCGTCTA CGTGTCCTGC
AATCCTTCCA CCCTGGCACG CGATGCCGGC ATCTTGGTCC ACGAATACGG CTATCGTCTG
CTCAAGGCCG GCGTCATGGA TATGTTTCCG CACACCGCCC ACGTCGAGTC CATCGCGGTA
TTCGAGCGCT GA
 
Protein sequence
MGHRGKRKPL PAEPIAAHIE SFAHDGKGIA HVDGRVVFVD GALPGEDVTF VYTEIKRDYA 
AGRVVEIVTA SPDRVPARCR HFALCGGCSL QYLSEDAQIA LKEDLLLDQF RRIGKVEPAA
QFPPLRGPHW GYRSRARLGA RYVAKKGREL VGFREHASAK IVDMTDCPVL HPALGERIQA
FAELIEGLSL RERLPQIEAA VGEERTALVF RVLEDPTAED FARLARFGKD QGLDVYIQRE
GRDSVAPVYP ETAHDLSYSL PEWEVTFRFG PLDFTQVNMA INRQMIDQVM QALDPQPEER
VLDLFCGLGN FTLPLARRAG HVTGVEGGAE AVARAIRNAA DNGIGNVEFH VADLSKPESC
GSWAGREYHK VLLDPSRSGA LEILQCVPNW KAGRIVYVSC NPSTLARDAG ILVHEYGYRL
LKAGVMDMFP HTAHVESIAV FER