Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCA1898 |
Symbol | rumA |
ID | 3104939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylococcus capsulatus str. Bath |
Kingdom | Bacteria |
Replicon accession | NC_002977 |
Strand | - |
Start bp | 2044378 |
End bp | 2045709 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637171055 |
Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
Protein accession | YP_114333 |
Protein GI | 53803775 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.75216 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTCATC GAGGCAAAAG AAAGCCGCTG CCGGCCGAGC CGATCGCAGC GCACATCGAA TCTTTCGCCC ACGACGGCAA GGGGATCGCC CACGTCGACG GCCGGGTGGT GTTCGTCGAT GGCGCTTTGC CGGGCGAAGA CGTCACTTTC GTCTATACCG AAATCAAGCG TGACTACGCC GCCGGGCGGG TGGTGGAGAT CGTCACGGCC TCGCCCGACC GGGTGCCGGC GCGTTGCCGG CATTTCGCCC TGTGCGGAGG CTGCAGTCTG CAATATCTGT CCGAAGATGC CCAGATCGCC CTGAAGGAAG ATCTGCTGCT GGATCAATTC CGCCGTATCG GCAAGGTCGA ACCGGCGGCT CAGTTCCCGC CGCTGCGGGG ACCGCACTGG GGTTATCGCA GCCGGGCCAG GCTCGGGGCG CGCTACGTGG CCAAGAAGGG CAGGGAGCTG GTGGGATTCC GCGAACACGC GAGCGCCAAG ATCGTGGACA TGACCGATTG TCCCGTGCTG CATCCGGCGT TGGGGGAGCG CATCCAGGCC TTTGCCGAGT TGATCGAGGG TCTTTCGCTG CGGGAACGGC TGCCACAGAT CGAGGCGGCG GTCGGCGAGG AGCGCACGGC GCTGGTGTTC CGGGTGCTGG AGGATCCGAC CGCCGAGGAT TTCGCCAGAC TGGCTCGGTT TGGCAAAGAC CAGGGTCTGG ACGTCTACAT CCAGCGGGAA GGGCGCGACT CGGTCGCTCC GGTCTATCCG GAGACCGCAC ACGACCTGAG CTACAGCCTT CCGGAATGGG AAGTGACCTT CCGCTTCGGT CCCCTGGATT TCACCCAGGT CAACATGGCG ATCAACCGCC AGATGATCGA CCAGGTCATG CAGGCGCTCG ATCCCCAGCC GGAGGAACGC GTGCTCGATC TGTTCTGCGG CCTGGGAAAC TTCACCTTGC CGTTGGCGCG CCGCGCCGGC CACGTCACCG GCGTGGAGGG AGGCGCGGAA GCGGTCGCGC GGGCGATCCG GAATGCGGCG GACAACGGTA TCGGCAACGT CGAATTCCAC GTTGCCGACC TGTCGAAGCC GGAAAGTTGC GGTTCCTGGG CCGGCCGGGA ATACCACAAG GTGCTGCTCG ATCCCTCTCG CTCCGGCGCC CTGGAAATCC TCCAGTGCGT GCCGAACTGG AAAGCCGGGC GCATCGTCTA CGTGTCCTGC AATCCTTCCA CCCTGGCACG CGATGCCGGC ATCTTGGTCC ACGAATACGG CTATCGTCTG CTCAAGGCCG GCGTCATGGA TATGTTTCCG CACACCGCCC ACGTCGAGTC CATCGCGGTA TTCGAGCGCT GA
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Protein sequence | MGHRGKRKPL PAEPIAAHIE SFAHDGKGIA HVDGRVVFVD GALPGEDVTF VYTEIKRDYA AGRVVEIVTA SPDRVPARCR HFALCGGCSL QYLSEDAQIA LKEDLLLDQF RRIGKVEPAA QFPPLRGPHW GYRSRARLGA RYVAKKGREL VGFREHASAK IVDMTDCPVL HPALGERIQA FAELIEGLSL RERLPQIEAA VGEERTALVF RVLEDPTAED FARLARFGKD QGLDVYIQRE GRDSVAPVYP ETAHDLSYSL PEWEVTFRFG PLDFTQVNMA INRQMIDQVM QALDPQPEER VLDLFCGLGN FTLPLARRAG HVTGVEGGAE AVARAIRNAA DNGIGNVEFH VADLSKPESC GSWAGREYHK VLLDPSRSGA LEILQCVPNW KAGRIVYVSC NPSTLARDAG ILVHEYGYRL LKAGVMDMFP HTAHVESIAV FER
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