| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1888 |
|---|
| Symbol | hsdM |
|---|
| ID | 3103261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | + |
|---|
| Start bp | 2029427 |
|---|
| End bp | 2031007 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637171045 |
|---|
| Product | type I restriction-modification system, M subunit |
|---|
| Protein accession | YP_114323 |
|---|
| Protein GI | 53803793 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0286] Type I restriction-modification system methyltransferase subunit |
|---|
| TIGRFAM ID | [TIGR00497] type I restriction system adenine methylase (hsdM) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGAAA AGCTGTCTCA ACAGGAAGTC AACGCCACCG CCTGGGCGGC GTGCGACACC
TTCCGGGGCG TGGTCGATCC CGCGCAGTAC AAGGACTACA TCCTGGTGAT GCTGTTCCTG
AAGTACATCA GCGACCTTTG GAACGACCAC TACGCCGAAT ACAAGGCGCA GTACGGGGAT
GACGACGAGC GCATCCGCCG CAAGCTCGAG CGCGAGCGCT TCATCCTGCC CTATGTCGAG
CTGAAGGAAG ACGATCAAGA GACCGGCAAG AGCCAGGTCA TCGACCGCTT CCTGGGCGAC
TTCAATGCGC TGTACGAGCG CCGCAACGAG CCCAACATCG GCGAGCTGGT CAACATCGTG
CTCGACCACA TCGAGGACGC CAACAAGGCC AAGCTCGAAG GGGTGTTTCG CAACATCGAC
TTCAACAGCG AGGCCAACCT CGGCAAGGCC AAAGACCGCA ACCGCCGCCT CAAAACCCTG
CTGGAGGACT TCGCCAAGCT CGACCTGCGC CCTTCGCGCG TGTCCGAAGA CGTCATCGGC
AATACCTACA TCTACCTCAT CGAACGCTTC GGCTCGGATG CCGGCAAGAA GGCCGGCGAG
TTCTACACCC CCAAGATGGT CTCGCGGCTG TTGGCGGCGC TGGCCAACCC CAGGCCGGGC
GACCGCATCT GCGACCCTTC CTGCGGCTCG GGCAGCCTGC TGATCGAAGC CGCGCAGTGG
GTCGAGGCGC AGGGCAGCCA CAACTACGCC CTGTTCGGCG AAGAAGTGAA CGGCGCCACC
TGGGCGCTGG CGCGGATGAA CATGTTCATC CACAGCAAGG ACGCAGCGCG CATCGAGTGG
TGCGACACCC TGAACAGCCC AGCGCTGATC GAGGGCGACC GGCTAATGAA GTTCAATGTG
GTGGTCGCCA ACCCGCCGTT TTCGCTCGAC AAGTGGGGCG CAGAGCACGC CGACCACGAC
CGTTTCAACC GCTTCTGGCG CGGCGTGCCG CCCAAGTCCA AGGGCGACTG GGCCTTCATC
ACCAACATGA TCGAGCGCGC CCTGCCAAGG GAAGGCCGGG TGGCCGTGGT CGTGCCGCAC
GGCGTGCTCT TTCGCGGCGG CGCCGAAGGC CGCATCCGCC GCGCCATGAT CGAGGAAAAC
CTGCTCGATG CCGTCGTGGG CTTGCCGGGC AACCTGTTCC CCACCACCTC GATCCCGGTG
GCCATCCTGC TCTTTGACCG CGCCCGCGAA AAAGGCGGCC CGCGTGAGGA TGTGCGCGAC
GTGCTGTTCG TGGACGCGAG CCGCGAGTTC ATTCCCGGCA AGAACCAGAA CCAGCTCTCC
GAAGCGCACT TTCAGAAGAT CGTCTCGACG GTGGCCGCGC GGCGCAACGT CGACAAATAC
GCCTACGTGG CCTCACTCGA CGAGATAGCC GAAAACGACT TCAACCTCAA CATCCCGCGT
TACGTCGACA CCTTCGAGGA GGAGGAAGAA ATCGACGTCG CCGCCGTGCA GCGCGAAATC
GAACAGCTCG AACGGGAGCT TGCCGACGTC CGCGCCCGCA TGCGCGAGCA CCTCAAGGCG
CTGGGGGTGG AGGGCGTATG A
|
|---|
| Protein sequence | MTEKLSQQEV NATAWAACDT FRGVVDPAQY KDYILVMLFL KYISDLWNDH YAEYKAQYGD
DDERIRRKLE RERFILPYVE LKEDDQETGK SQVIDRFLGD FNALYERRNE PNIGELVNIV
LDHIEDANKA KLEGVFRNID FNSEANLGKA KDRNRRLKTL LEDFAKLDLR PSRVSEDVIG
NTYIYLIERF GSDAGKKAGE FYTPKMVSRL LAALANPRPG DRICDPSCGS GSLLIEAAQW
VEAQGSHNYA LFGEEVNGAT WALARMNMFI HSKDAARIEW CDTLNSPALI EGDRLMKFNV
VVANPPFSLD KWGAEHADHD RFNRFWRGVP PKSKGDWAFI TNMIERALPR EGRVAVVVPH
GVLFRGGAEG RIRRAMIEEN LLDAVVGLPG NLFPTTSIPV AILLFDRARE KGGPREDVRD
VLFVDASREF IPGKNQNQLS EAHFQKIVST VAARRNVDKY AYVASLDEIA ENDFNLNIPR
YVDTFEEEEE IDVAAVQREI EQLERELADV RARMREHLKA LGVEGV
|
|---|
| |