| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1875 |
|---|
| Symbol | |
|---|
| ID | 3104611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | + |
|---|
| Start bp | 2016800 |
|---|
| End bp | 2017804 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637171034 |
|---|
| Product | bile acid transporter family protein |
|---|
| Protein accession | YP_114312 |
|---|
| Protein GI | 53803812 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0385] Predicted Na+-dependent transporter |
|---|
| TIGRFAM ID | [TIGR00841] bile acid transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.615101 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCGAA TCTGCAATTC ACTTGCGAAC CTGTTTCCGG TCTGGGTGCT GCTGTGCTCG
GGGCTGGCGC TGTATTTCCC CCCCTGGTTC ACCTGGTTCA CCGGCCCGAT GATCGTCTGG
GGACTGTCGA TCATCATGCT TGGGATGGGC ATCACGCTCA CTTTCGACGA CTTCCACCGG
GTGGCCAAGA TGCCGCGAAT CATCATCGCC GGCACCGTCG CGCATTTCGG CATCATGCCG
TTCCTCGGCT GGTCGATCGC GCATGGATTG GCGCTCGAAC CGGAACTGGC GGTGGGACTC
ATCTTGGTGG CCTGCTGCCC CTGTGGGACG GCGTCCAACG TGGTGAGCTA CATCGCCCGC
GCCGACGTGG CGCTGTCCGT GCTGCTGACC ATGGTATCGA CCTTCACCGC GGTGGTGATG
ACCCCGCTGC TGGTCAAGCT CCTGGCGGGC GCCTACACGC CGGTGGACGG CTGGGGCATC
TTCCTGAACA CCTTGCAGGT CATCGTCATG CCCGTCACCG CCGGCCTCCT GCTGAACCGC
TATGCGCCGC GGCTGGTGCG TACCGTCAGC CCGGTGACGC CGCTGGTGTC GGTGATCTTC
ATCGCCTTCA TCTGCGCCAG TATCATCGGC GCCAATGCCG ACGTCATCAA ATCCGCCGCA
CTCAAGTTGT TCGGCGCCGT CGCCTTGCTG CACGTCGGCG GATTCGGTCT GGGCTACGTC
TTCGCCAGGG TGCTCGGCTA CCGCGACGCG GTCGTCCGCA CCATCGCCAT CGAGGTTGGC
ATGCAGAACT CGGGGCTCGC CACCGTGCTG GCCAAGGCCA ATTTCGCAGG CATGGCGCTG
GCACCCATCC CTTCGGCGAT TTCCGCCAGC TTCCATTCCA TCATCGGCAG CCTGCTGGCG
GGCTGGTGGC GGCTGCGCAC GCATCGGCCC CTGCCTTCCA TGGGGCACGC GTTCGACACC
CCTATGCCAG TCCCAGCGGA TTGTCCGGAT CGATGTGAGC CATGA
|
|---|
| Protein sequence | MLRICNSLAN LFPVWVLLCS GLALYFPPWF TWFTGPMIVW GLSIIMLGMG ITLTFDDFHR
VAKMPRIIIA GTVAHFGIMP FLGWSIAHGL ALEPELAVGL ILVACCPCGT ASNVVSYIAR
ADVALSVLLT MVSTFTAVVM TPLLVKLLAG AYTPVDGWGI FLNTLQVIVM PVTAGLLLNR
YAPRLVRTVS PVTPLVSVIF IAFICASIIG ANADVIKSAA LKLFGAVALL HVGGFGLGYV
FARVLGYRDA VVRTIAIEVG MQNSGLATVL AKANFAGMAL APIPSAISAS FHSIIGSLLA
GWWRLRTHRP LPSMGHAFDT PMPVPADCPD RCEP
|
|---|
| |