| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1673 |
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| Symbol | |
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| ID | 3104024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylococcus capsulatus str. Bath |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002977 |
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| Strand | - |
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| Start bp | 1777907 |
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| End bp | 1781947 |
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| Gene Length | 4041 bp |
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| Protein Length | 1346 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637170835 |
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| Product | sensory box protein |
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| Protein accession | YP_114116 |
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| Protein GI | 53804221 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.338574 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAACG AGGTAAAGGG GGCATCACTC GACGCCAAGC GGTTGGCGGT GCTGCAGCCG
TTCCGGCGCC CCCTCCCATG GTCGGTCGTC GTCGCACTGA CGCTAGTCAC CACTCTCGTC
GGTGGGTTGC AGTTCTACCT GTCGCAGGTG CGGCATTTGC GGGAGCATGC CGGTGATACG
CTGGCCGCAG TGGTCCAGGC AAAATTTCAG CATGTCGCGC ACTGGCGTGC CGAGCGGCTG
GCCGATGCCG AGCAAGTGGC CGGGAATGCG CCATTCCTCG CGGCCGCCGC CGCCTGGCTG
GTCGCAGGCC AGCAGGATGC GGCGTCGACC CAGCGCATGC TGGCCCAGAT GCAATCGTGC
CGGGAAATGG GCCGCTACCG AAATGTTCTG CTGCTCGACG TGGCCGGCCG TATCCGTTTG
TCACTGGTGC CCCACACTGG AGACGAGGCA GGCGGCATCT ATGAGCGTGC TCCGCTGCCC
GTGGCAGGAG AGGGCCTACA GCCGCTCCTC GGTGACTGGT ACCTTTCGCA GGACGAAACG
GAACTTCGGG TCGATGTGTC CTTTCCGCTG GTAGTGTACG AAGCGAATGG CGAGCGTCGG
TTCGTAGGCG CCCTTGTGAC GGTGGCCGAG GCCGGCGATC TCCTGCGGAC CGTGCTTGAA
TCGCTGTCGC AGGTCAAACC GGAGATCTCT CTGATCGGTC AGAGAGGAAA CCGCTTGGTT
TCCCTGAACC GTGATTTTCT GGAGCGTGGC GGGGAGCCTT CGCCGCCGCC GAAGCCGCTT
GCCGAAGCGG CCCTCAGGGT CGTCTATGGC GAGCGCGGCA TGGTCATGCA GGAAGGTGAC
GCCGGAGCGG ACCTATTGTC GCTGGGGGCA CCGATTCCAG GATCGGCTTG GTACGTGATG
GCAGCCACCT CCGCGACTCA ACTCCCTCAG GAAAACCAGT CTTTTCTTCT CGGCGCGTCT
TTACTGGGAC TGCTCGGCGC TCTCGCGGCC GCGGTGGCGC TGCTGGCGCG CTCGTCCGAG
CGCCATCACA TGCAGGCCGC TCTCGAGGCG GAGAAGGAAC GGGCCGACCT GTCGAGACGC
TTCGAATACT TCGTCCGCTA TGCCAATGAC GCCATTCTTC TCGCCGACCG GGATCACCGC
ATCGTCGATG TCAATGATCG TGCGCTGGAT CTCTATGGGT ATTCTCGGGA AGAACTGGCC
GGGATGACCC TGGCGGACGT CGTGGCCGGG GATGTGGAAG GTGTCGAACA TGGGCGTCTG
GACGAAGCGC TCGCCCGGGG TGGAGGCGTC TGGGAGTCGG TGCATACCCG CAAGGACGGG
GTTCCGGTCC CCGTGGAATT GAGCGTCCGG TCGATCAGCG TGGAGGGTTC CGATTTCGTC
CAGGCGATCG TGCGGGACGT CACCGAGCGC AAGCGTATCG AACTGGCGCT CGCACGGCAG
AAGAATCTGT ACAGCCTGCT GGCGCAGACC AATCAGATCA TCGTCCGCCA TACCAGCGAA
CAGGAGCTGT TCGATTCGGT CTGCCGAATC GCCATAAGGA ATGGCGGCTT CCTCTTCGCC
TGGATCGGGA TGATCGAAAA CGAAACCGGC GACCTGGTCC CGGTTGCCCG CTACGGCGAC
GATGCCGGTT ACGTAGGGAG GCTGCACCTC TCCAGGGCGG ATACCGCGCA TCATCACGGC
CCTACGCGAA TGGCCGTGGC CGCCGGTCAC CACGTGATCA GTGACGATTT TCTTGCCGAT
CCCCTGACAC GGCCCTGGCA TGAAGCGGGT CTGGCCGCGG GCGTGCGCGC CTCCGGCGCT
TTTCCCATCC GTCGGTTCGG AAAGGTGGTG GGTGCGATCA ATCTCTACGC GGGGGAACGG
GGTTTCTTTT CGGAAGACAT CGTCGCCGTG CTCGATACCA TGGCGATGGA CGTGTCTTTT
GCATTGGACA TCCTCGCCCG CGACGCTGAG CGGGAAAGGA GCGAAATGCG GCTCCGGGAA
AGCGAGGAGC GGTTCCGGCT GGCGGCGAAT TCGGCGCCGG TGCTCATCTG GATGGGGGAT
ACCGCGCGCG GCTGCACTTT TTTCAACGAC ATGTGGTTGA ATTTCACCGG GCGTTCACTC
GAATACGAAT TGGGTGACGG ATGGCTGGAG GGTATGCATC CCGAGGACCG TTCCCGCTGG
ATCTGCGCGT ACTCGGCTGC GTTCGATGCC CGGAAGCCAT TCGAAATCGA ATACCGCCTG
CGTCGTCGCG ACGGGGAATA CCGCACGATA CTGGGCAAGG CGACCCCCCG GTTCGACGCC
GGCGGCGAAT TCATCGGTTA TATCGGTTCA TGCATCGACA TTTCCGACAG GAAAAAAGGC
GACGAGAGCC TTCTGTTGGC CGGCAAGGTG TTCGAAGCGG TACGCGAGTC GATCATTGTG
ACGGATGCGA ACCGCGTGAT CGTGGCGGTC AATCCCGCCT TCAGCGACAT GACGGGCTAC
AGTCCGGAGG AGGCGGTGGG CAGGACGCCG GCGTTTCTGC AGTCCGGCAG GCATGGCAAA
GAATACTATG CGGCGATGTG GAGGGCCGTC GATCAGGAAG GGTCCTGGCA GGGCGAATTC
TGGAACCGGC GCAAGAATGG CGAGCTGTTC GCGGTTCTGG AGACGATCGT GACGGTTCGC
GACGAGACCG GCGCCATGGT CAATTACATC GGTGTTGCCG CGGACATTTC CAGCCTCAAG
GAGGCGGAAG AGCACATCCA CCATCTGGCC TATTATGACC CTCTGTCGGC CTTGCCCAAC
CGGCGCTACC TGATGGAACG AGCGGAATAC GCGCTGGCCT TGGCGGAACG CCGCAAGGAA
GAGCTGGCCG TGGTGTTCCT GGATGTCGAC CATTTCAAGG ACGTCAACGA TTCCCTGGGG
CATCAGGTAG GTGATGAACT GCTGGTCCGG GTGGCGACCC AGATCAAGGA ATTTACCCGC
GAGACAGACA CGGTCGCCCG CCTCGGGGGG GACGAGTTCG CACTCCTTCT GCCGGATTTG
GGCCGTGACG CGGTGTCGCA GGTCGCCGAT AAGATACTCG CCGCCCTACG CAAGCCCTTC
GAGCATTCGG GGCAGACCTT TGCAGTAACA GGCTCCATCG GCATCAGCCT TTACCCCCAC
GACGGAACCG ATTTCGAGAC GCTGCTCCGC AACGCAGATA CCGCGATGTA CCACGCGAAA
CAGCAGGGCC GCAACCAGTT CCGATTCTAC GATCCCGGGA TGAACGTGGA CATCCTGGCG
CGCCTGACGG TGCTGTCCGA ACTCAGAGAA GCCATCCCGG CGGGCGAGCT CCGGACCTTT
TTCCAGCCCG AGATCGATCT GGCCAATGGC ACGCTGGTCG GGGCCGAAGC TTTGGTACGC
TGGCAGCATC CCACGCGGGG CCTGCTGTCA CCCGACCAGT TCATTCCCGT GGCCGAGAGC
AATGATCTGA TCATCGCCAT CAGTGACTGG GTGCTTGAGG ACACTTGCCG TCATCTCGCC
CAATGGAAGA AAGCCGATCA GGCGCCGATT ACCGTGGGCG TCAACCTGGC AGCGCGCCAT
TTCCGCGATC CGCGGCTGGT GCCGCGTGTC AAGTCGTTGC TGTGCCGTTA CGGCGTTCCC
GGCTCGTCCC TGCAGCTTGA ACTGACCGAA TCCACCCTCC TGGATGCCGA TGCCCAGACC
ATGATCGTGC TGCAGGAACT GATCGCGCTG GGATGCAGCC TCTCGATCGA TGATTTCGGC
ACGGGCTATT CCAGTCTGTC CTATCTCAAG AACCTGCCGA TAGCCACGTT GAAGATCGAC
CAGAGCTTCG TCCGCGACAT CGCTTTCGAT GCCGACGACA GGACCATTTC CGGTACGGTG
GTGGCTTTGG GCCACAGCCT GGGGCTCAAG GTCATCGCGG AAGGGGTCGA AACCGAGGAA
CAGCGGCGCA TCCTGCTGGA ACAGGGCTGT GACTTCGGGC AGGGTTACCT GTTCTCCCGC
CCGCTGAGCT CCAAGGAGTT CATCAAATGG CGGATGGAGC ACGCGCTGCG CCTGGAGACG
GATCCGCGCC ACCGCGACTG A
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| Protein sequence | MSNEVKGASL DAKRLAVLQP FRRPLPWSVV VALTLVTTLV GGLQFYLSQV RHLREHAGDT
LAAVVQAKFQ HVAHWRAERL ADAEQVAGNA PFLAAAAAWL VAGQQDAAST QRMLAQMQSC
REMGRYRNVL LLDVAGRIRL SLVPHTGDEA GGIYERAPLP VAGEGLQPLL GDWYLSQDET
ELRVDVSFPL VVYEANGERR FVGALVTVAE AGDLLRTVLE SLSQVKPEIS LIGQRGNRLV
SLNRDFLERG GEPSPPPKPL AEAALRVVYG ERGMVMQEGD AGADLLSLGA PIPGSAWYVM
AATSATQLPQ ENQSFLLGAS LLGLLGALAA AVALLARSSE RHHMQAALEA EKERADLSRR
FEYFVRYAND AILLADRDHR IVDVNDRALD LYGYSREELA GMTLADVVAG DVEGVEHGRL
DEALARGGGV WESVHTRKDG VPVPVELSVR SISVEGSDFV QAIVRDVTER KRIELALARQ
KNLYSLLAQT NQIIVRHTSE QELFDSVCRI AIRNGGFLFA WIGMIENETG DLVPVARYGD
DAGYVGRLHL SRADTAHHHG PTRMAVAAGH HVISDDFLAD PLTRPWHEAG LAAGVRASGA
FPIRRFGKVV GAINLYAGER GFFSEDIVAV LDTMAMDVSF ALDILARDAE RERSEMRLRE
SEERFRLAAN SAPVLIWMGD TARGCTFFND MWLNFTGRSL EYELGDGWLE GMHPEDRSRW
ICAYSAAFDA RKPFEIEYRL RRRDGEYRTI LGKATPRFDA GGEFIGYIGS CIDISDRKKG
DESLLLAGKV FEAVRESIIV TDANRVIVAV NPAFSDMTGY SPEEAVGRTP AFLQSGRHGK
EYYAAMWRAV DQEGSWQGEF WNRRKNGELF AVLETIVTVR DETGAMVNYI GVAADISSLK
EAEEHIHHLA YYDPLSALPN RRYLMERAEY ALALAERRKE ELAVVFLDVD HFKDVNDSLG
HQVGDELLVR VATQIKEFTR ETDTVARLGG DEFALLLPDL GRDAVSQVAD KILAALRKPF
EHSGQTFAVT GSIGISLYPH DGTDFETLLR NADTAMYHAK QQGRNQFRFY DPGMNVDILA
RLTVLSELRE AIPAGELRTF FQPEIDLANG TLVGAEALVR WQHPTRGLLS PDQFIPVAES
NDLIIAISDW VLEDTCRHLA QWKKADQAPI TVGVNLAARH FRDPRLVPRV KSLLCRYGVP
GSSLQLELTE STLLDADAQT MIVLQELIAL GCSLSIDDFG TGYSSLSYLK NLPIATLKID
QSFVRDIAFD ADDRTISGTV VALGHSLGLK VIAEGVETEE QRRILLEQGC DFGQGYLFSR
PLSSKEFIKW RMEHALRLET DPRHRD
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