Gene MCA1658 details

Gene Information

• Locus tag: MCA1658
• Symbol: ribD
• ID: 3102634
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: -
• Start bp: 1760717
• End bp: 1761853
• Gene Length: 1137 bp
• Protein Length: 378 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637170820
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_114101
• Protein GI: 53804252
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.629328
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCTTCAT CGATATTCCC TTTGTCTGAT GGCGCCAGCT GGTCTCCCGA GGATCACTGC 
TTCATGGCGC ATGCCTTGCG TCTGGCCGAA AAGGGTATGT ATACGACCGA CCCCAACCCC 
CGGGTGGGTT CCGTCGTGGT GCAAGGAAAC GAAGTGGTCG GCGCGGGCTG GCACCAGCGG 
GCCGGCGGCC CCCATGCCGA GATCGCGGCG CTGCGGGATG CCCGGGGGCG GGCGGCAGGG 
GCCACGGTCT ATGTGACGCT GGAGCCTTGT TCGCATCATG GCCGCACACC GCCCTGCGCC 
GATGCCCTGA TCGAGGCGGG GGTGCATCGG GTGGTGGCAG CCATGCAGGA TCCCAATCCA 
CGGGTGGCCG GGCAAGGTCT CGAACGGTTG CGGCGGGCGG GCATCGAAGT GTCCTGCGGT 
TTGCTGGCGC GGGAGGCGGA GCGCTTGAAT CAGGGCTTCG TCAAGCGGAT GCGTTTGGGT 
TTGCCGTTTG TCCGGAGCAA GCTGGCCATG AGCCTCGACG GGCGTACCGC CCTGGCGTCC 
GGTGACAGCA AATGGATCAC CGGAGATGCG GCTCGGCGCG ACGTCCATCG CCTGAGGGCG 
CGCAGCTCGG TTATCGTGAC AGGGATCGGC ACCTTGCGAG CCGACGATCC TTTTCTCACC 
GCCCGGCCGA ATGATGCGAC CGAGCTGGAG CAGCCGGCAC GGGTGATTCT GGACAGCCGT 
CTGCGGTCAC CGCCGAACGC ACGGGTTTTC CAGCAGCCCG GACGTACGCT GGTGCTGACC 
ACGGCGAGCG ATCCCCGGGC GCGGCAAGCA CTGCTCGATG TCGGCGCCGA AGTGCTGGAG 
GTCGAGCCCG ATGGCGCGGG AAGGCCGGAC GTGGCAGCCG TCGTGCGGCT GCTGGGACGG 
CTGGAGTTCA ACGAGGTGCT TTTCGAAGCC GGTGCTAGCC TGAACGGAGC GCTGCTGTCG 
GCCGGCGTGG TCGATGAGTG GGTCGTCTAT CTCGCTCCTT GTGTCTTGGG AGACGAAGCG 
CGTGGGCTGT TCCGTCTGCC CGGTCTGGCC GGGATGGCGG ACCGTCCGGA ACTGGCGATC 
GTGGATGCGC GGCGGGTCGG CAGTGACATG CGGCTGATCC TGCGGTCGAG CGGCTGA 

 

Protein sequence

MSSSIFPLSD GASWSPEDHC FMAHALRLAE KGMYTTDPNP RVGSVVVQGN EVVGAGWHQR 
AGGPHAEIAA LRDARGRAAG ATVYVTLEPC SHHGRTPPCA DALIEAGVHR VVAAMQDPNP 
RVAGQGLERL RRAGIEVSCG LLAREAERLN QGFVKRMRLG LPFVRSKLAM SLDGRTALAS 
GDSKWITGDA ARRDVHRLRA RSSVIVTGIG TLRADDPFLT ARPNDATELE QPARVILDSR 
LRSPPNARVF QQPGRTLVLT TASDPRARQA LLDVGAEVLE VEPDGAGRPD VAAVVRLLGR 
LEFNEVLFEA GASLNGALLS AGVVDEWVVY LAPCVLGDEA RGLFRLPGLA GMADRPELAI 
VDARRVGSDM RLILRSSG