Gene MCA1553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMCA1553 
SymboldapE 
ID3103053 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylococcus capsulatus str. Bath 
KingdomBacteria 
Replicon accessionNC_002977 
Strand+ 
Start bp1654485 
End bp1655618 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content66% 
IMG OID637170726 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_114008 
Protein GI53804134 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGACA CCCTCGATCT CGCCGTCGAG CTGATCCGGC GCGAATCCGT GACCCCCGAA 
GATGCGGGCT GCATGGACCT GGTGATCGAG CGGCTGGCGC CCCATGGCTT CCAGGCCGAG 
TGGCTGAATT TCGGTGACAC CAAGAACCTC TGGCTCCGAC GCGGCGAAGC GGCGCCGCTC 
TTCGTGTTCC TGGGCCATAC CGACGTGGTG CCGCCGGGTC CCCTGGAAGA CTGGTCCTCC 
CCCCCCTTCG CGCCCGAAAT CCGCGAAGGC CGACTGTACG GACGTGGCGC GGCCGATATG 
AAGGGCAGTA TCGCAGCCAT GACCACGGCC TTGCAGCGGT TCGTGGTCCA CCACCCCGGG 
CACCCGGGCT CCCTCGCCGT CCTGCTGACC AGTGACGAAG AGGGCTCGGC CTACGACGGC 
GTGGTCAAGG TGGTGGATGT CCTGAAGTCG CGAGACACGG TGATCGACTG GTGTCTGGTC 
GGCGAGCCGT CGAGCTTCGC CCGGCTGGGC GATGTGATCC GGGTGGGCCG CCGAGGCTCC 
TTGGGCGGCG TGCTGCGGAT CCTGGGCGTG CAGGGCCACG TCGCTTATCC CGACAAGGCC 
GACAACCCCA TCCACCGCTT CGCTCCCGCG CTTCACGAAC TCACTACCGA AATCTGGGAC 
GGAGGCAACG AATTCTTCCC TCCGACCAGT TTTCAGGTCT CCAACATCCG GGCGGGAACC 
GGCGCCGACA ACGTCATCCC CGGCAAACTC GAGGTTCTGT TCAACTTCCG TTTTTCGACC 
GAACTGACCG TGGAGGCCAT CCAGCGCCGT GTGGAAACCA TCCTCGACCG CCACGGCCTC 
CACTACGAAT TGAGCTGGCG ACTCTCCGGT CTGCCGTTTT TGACCCGGGA AACGGAGCTG 
GTGAGCGCGA CCCGTGCCGC CATCGCCGCA GTCACCGGCC TCCAGCCGCG TGCCGATACC 
GGCGGCGGCA CTTCCGATGG CCGCTTCATC GCCCCGACCG GTGCCCAGGT CGTGGAGCTG 
GGACCGCTCA ACGGCAGCAT CCACAAGATC GATGAGCACG TTGCGGTCGA AGACCTGGAA 
GCCCTGTCCG CGATCTACGA ACGCATCCTC GGCAATCTGC TGGCGGTCCT CTGA
 
Protein sequence
MSDTLDLAVE LIRRESVTPE DAGCMDLVIE RLAPHGFQAE WLNFGDTKNL WLRRGEAAPL 
FVFLGHTDVV PPGPLEDWSS PPFAPEIREG RLYGRGAADM KGSIAAMTTA LQRFVVHHPG 
HPGSLAVLLT SDEEGSAYDG VVKVVDVLKS RDTVIDWCLV GEPSSFARLG DVIRVGRRGS 
LGGVLRILGV QGHVAYPDKA DNPIHRFAPA LHELTTEIWD GGNEFFPPTS FQVSNIRAGT 
GADNVIPGKL EVLFNFRFST ELTVEAIQRR VETILDRHGL HYELSWRLSG LPFLTRETEL 
VSATRAAIAA VTGLQPRADT GGGTSDGRFI APTGAQVVEL GPLNGSIHKI DEHVAVEDLE 
ALSAIYERIL GNLLAVL