Gene MCA1538 details

Gene Information

• Locus tag: MCA1538
• Symbol: pilU
• ID: 3103064
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: +
• Start bp: 1639147
• End bp: 1640265
• Gene Length: 1119 bp
• Protein Length: 372 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637170711
• Product: twitching motility protein PilU
• Protein accession: YP_113993
• Protein GI: 53804163
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG5008] Tfp pilus assembly protein, ATPase PilU
• TIGRFAM ID: [TIGR01420] pilus retraction protein PilT

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAATTCG CATCGCTGCT CAGGCTGATG GTACTGAAGA AAGCGTCCGA TCTCTTCATC 
ACCGCGGCCA AGGAGCCCTG CATGAAGCTG AACGGCGCCA TCGTGCCGCT GTCCAGCACC 
AAACTCTCCA CAGACCAGGT GCGCCAGCTC GTCCTCGGAA TCATGAACCA GCGCCAGCGC 
GACGAGTTCG AGAACACCAA CGAATGCAAC TTCGCCCTCT CCGCGGCCGG ACTGGGCCGG 
TTCCGGGTCA GCGCCTTCGT GCAGCGGAAC AGTCCCGGCA TGGTGCTGCG CAGGATCGAG 
ACCGAGATTC CCACCGTGGA ACAGCTCAAT CTGCCCTCCG TCCTCAACGA CCTGGTCATG 
ACCAAGCGCG GCCTGATCCT GTTCGTGGGC GCGACCGGCA CCGGCAAGTC GACGTCGCTG 
GCGGCGATGC TCAAGTACCG CAACGAGCAC TCCAGCGGCC ACATCATCAC CATCGAGGAT 
CCCCTGGAAT TCGTACACCC GCACGCGGGC TGCATCGTCA CCCAGCGCGA GGTCGGCATC 
GATACCGAAT CCTACGAAGT CGCGCTGAAG AACACCCTGC GGCAGGCGCC GGACGTGATC 
CTCATCGGCG AGATCCGCAC CCGCGAGACC ATGCAGCAGG CCATCACCTT CGCCGAAACC 
GGCCACCTCT GCCTGAGCAC CCTGCACGCC AACAACGCCA ACCAGGCGCT GGATCGCATC 
CTCCATTTCT TCCCGGAAGA CATGCATCCG CAGGTGTTCA TGGACCTGTC GCTGAACCTG 
CGTGCCATCA TCGCCCAGCA GCTCGTCAGG CGCGCCGACG GCAAGGGGCG CTATCCGGCG 
GTGGAAATCC TCATCAATAC CCCTCTGGTC TCCGACCTGA TCCGCCAGGG CGAGGTCCAC 
AAGCTCAAGG ACGTGATGAA ACAGTCGCGC GAACAGGGCA TGCAGACCTT CGACCAGGCG 
CTGTTCGAAT TGTTCAAGGC GGGCAGGATC GGCTACGAGG ATGCCCTCTA CTCCGCCGAT 
TCCAAGAACG AAGTCCGCTT GATGATCAAG CTCAGCGAAG AAGGCAGCAT CGACAAATAC 
GCGCCCAAGG ACGACTCGAT CCGGATCGTC GACAACTGA 

 

Protein sequence

MEFASLLRLM VLKKASDLFI TAAKEPCMKL NGAIVPLSST KLSTDQVRQL VLGIMNQRQR 
DEFENTNECN FALSAAGLGR FRVSAFVQRN SPGMVLRRIE TEIPTVEQLN LPSVLNDLVM 
TKRGLILFVG ATGTGKSTSL AAMLKYRNEH SSGHIITIED PLEFVHPHAG CIVTQREVGI 
DTESYEVALK NTLRQAPDVI LIGEIRTRET MQQAITFAET GHLCLSTLHA NNANQALDRI 
LHFFPEDMHP QVFMDLSLNL RAIIAQQLVR RADGKGRYPA VEILINTPLV SDLIRQGEVH 
KLKDVMKQSR EQGMQTFDQA LFELFKAGRI GYEDALYSAD SKNEVRLMIK LSEEGSIDKY 
APKDDSIRIV DN