| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1533 |
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| Symbol | |
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| ID | 3102613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylococcus capsulatus str. Bath |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002977 |
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| Strand | - |
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| Start bp | 1632843 |
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| End bp | 1635740 |
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| Gene Length | 2898 bp |
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| Protein Length | 965 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637170706 |
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| Product | sensory box protein |
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| Protein accession | YP_113988 |
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| Protein GI | 53804176 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.76081 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACTACC TGATCCTTGC TTTGGGTGTT GCTTTCGTTC CGATCGCGCT GGCCTACGGG
TTGCTGCTGA AGCCCAAGCG GGCCGAAGCG GCGCTGCGAC GGAGCGCGTT CCATCTGCGC
GAAGCGCAGC AGGTGGCCAA TCTCGGCAGT TGGGAACTCG ATCTGGTGCA AGGCCGGCTG
GAATGGTCGG ACCAGGTGTT CCGGATTTTC GAGATCGATC CCGAACGGTT CGAGGCGTCC
TACGAAGCCT TCCTCGCCCT CGTGCATCCC GACGACAGGG AGAGGGTAGA CGCGGCCTAC
CGCCGCTCGA TCGCCGACAG AGGGTCCTAT GAAATCGTCC ATCGGCTGCT CATGCCAGAC
GGCCGCGTCA AACACGTCCG CGAGCGTTGC CAAACCTTTT ACAGCGAAGA TGGGCGGCCC
TTGCGATCAG TGGGGACGGT ATGGGACGTC ACATCCTTTC ATGAAACCGA AGAGAAACTT
CACCGACTCG CTGCCATCGT GGAATCGACC GGTGACACCG TCATCGTCAG CGATCTCCAA
GGCAGAATCC GTACCTGGAA CAAAGGCGCG GAACGGATGT GGGGCTATGC GGCAGAGGAA
ATCATAGGGC AGCCGGTCAC CGTTCTGCCA CCGCTCGCAA AGCAGGGCGA ACCGGGGCAG
ATATTGCGGC GAGTCATCGA TGAGCACGAG GTCGTCCGTT TCGAGAGCCG GGGTCTGCAC
AAGGACGGCC GCGATTTCCC GATATCGCTG ACGGTTTCGC CGCTTTTCGA CGCCGAAAAC
CGCCTGACCG GCGTATCCGC GATCATTCGT GACATCACGG AAATGGAACG GCTGAAAGCG
ACGTTGCAGG AGCGGCTCAA ATTGGTGGAA ATGGTCTTCC AATACAGTGT CTCGTGCCTC
GTCGTTCTGG ATCCCCAGTT CAATTTCATC CGTGTCAATC CGGCCTATGC GCGGGCCTGC
CGCCGGGATG TCGCCGAGTT CGAAGGCCGC AACCATTTCG AGCTATACCC TTCGGATGCC
CGGTTCATCT TCGAGGAGGT CGTGCGCACC CGCCGGCCGT TCGAAGCGGT TGCGCGCCCT
TTCACGTTTC CGGACCAGCC GGAACGGGGC GTCACCTACT GGGACTGGAA CCTGGTGCCG
GTTCTCGACG GCAAAGGCGA GGTTGAATAT CTGCTGTTCT CTCTGGTCGA CGTGACCGAC
AGGCAGAAGG CCACGGCGCA GCTGCGCCTG ATCGAAACCG CCTTCCAGCA TACCCGCGAT
GCGGTGCTGA TCACCGATGC CCGGGCCAGG ATCCTGCGGG TCAATCCTGC TTTCGAAACC
ATCACTGGCT ACAGTGCCGG GGAAGTGGTC GGACGCACGC CCAGAATGCT CCAGTCCGGG
CGTCATGACG GCGCTTTCTA CCGGCGGTTC TGGCGGGCGC TCGAGACCGA AGGGCATTGG
AGCGGCGAGA TCTGGAACCG CCACCGGGAC GGTCACATTT TCCCCGCATG GCAGTCGGTG
TCGGCGGTCA AAGGCCCCGA TGGCAGCACG ACCCACTATG TCAGCATCTT CACCGACATC
AGCGAGTTCA AGCGGGCCGA AGCTCAGATC CGCTATCTCT CCTACCACGA CGATCTCACG
GGCCTGCCGA ACCGGGCCTA TTTCCAGGCG CGGCTGGACC AGCTCATCGA AGCTGCGGCA
CGGGACCGGA AGCAGATCGC CCTGGTCGTG CTCGATCTGG ACCGTTTCAA GACCATCAAC
GATTCGCTGG GGCACAGCGT GGGCGACGAG CTTCTGTGCC AGGTAGCTGA GCGAATCCAG
GACTGTACCG GACAGGGTGA CTTCGTGGCT CGCCAGGGGG GTGACGAATT CGTCGTCATC
CTGGCAGACT CCGATGCCGT TCGGGCGGCG CGGGTCGCGA ACGCGATGAT CTCGGCCATA
GCGAAACCTG CCGTCGCCGG TGGCCGGACA CTGATCGTGA CGCCGAGCTT AGGGATCAGT
CTCTATCCCC ACGACGCCGG CGACTCCGAG AGCCTGATCA AGAGCGCCGA CGCGGCGATG
TACCACGCGA AGTCTCTGGG CCGCAACACC TACCAGTTTT TCTCGGCGGA AATGAGCGCC
GTGGCCACCG AGCGGCTGGC CCTGGAAAAT GCCTTGCACC AGGCCCTGTC GAACGGGGAG
TTCCGGCTTT ATTATCAGCC ACAGATCGAG GTCTGCTCCC GCCGGCTGAT CGGGCTGGAA
GCGTTGATCC GCTGGCGGCA TCCGGAGGTG GGCTGGGTGC CGCCGCTACG CTTCATCCCG
TTGGCCGAAG AGACCGGCAT CATCCATCGG ATCGGTCGAT GGGTCCTGGA GGAGGCCTGC
CGCCAGCAGC GCGAATGGCA GGCCGCAGGT CTGTGCATCG TTCCCGTCGC GGTCAACCTG
TCGCCGCTGC AATTGCAGAA GGACGATTTC CCGGAACAGG TGGAAGCGTT GCTGTCCGGC
TGCAGACTGG CGCCGGGACT CCTCGAACTG GAGCTGACCG AGACGGCGGT CATGCGCGAC
GTCGGACGGA TGTCCGACAT GCTGCGGAAA CTGAAGGAGC GCGGCACACG CTTTTCCATC
GACGATTTCG GCACCGGCTA CAGTTCGCTC GGATACCTCA ACCGTTTTCC GGTCGACAAG
CTGAAGATCG ACCAGTCGTT CATTCGCGAC GTGACCCGCA GGGAAGACCA TGCCGCGATC
ACTCGGGCCA TCATTGCCCT GGCCAAGCAG CTGCACTTGA AGGTGGTCGC CGAGGGCGTG
GAGACTGCGG AGCAACTCGA ATTCCTCGAA CGGGCCGGGT GCGACGGGGC ACAGGGGTTC
TACTTCAGCC GGCCGGTGCC GGCGGATGAG ATCGCCGGTT GGTTGTCCCG GGAGGGCGCG
GTTCAGGATC GCCGGTAG
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| Protein sequence | MDYLILALGV AFVPIALAYG LLLKPKRAEA ALRRSAFHLR EAQQVANLGS WELDLVQGRL
EWSDQVFRIF EIDPERFEAS YEAFLALVHP DDRERVDAAY RRSIADRGSY EIVHRLLMPD
GRVKHVRERC QTFYSEDGRP LRSVGTVWDV TSFHETEEKL HRLAAIVEST GDTVIVSDLQ
GRIRTWNKGA ERMWGYAAEE IIGQPVTVLP PLAKQGEPGQ ILRRVIDEHE VVRFESRGLH
KDGRDFPISL TVSPLFDAEN RLTGVSAIIR DITEMERLKA TLQERLKLVE MVFQYSVSCL
VVLDPQFNFI RVNPAYARAC RRDVAEFEGR NHFELYPSDA RFIFEEVVRT RRPFEAVARP
FTFPDQPERG VTYWDWNLVP VLDGKGEVEY LLFSLVDVTD RQKATAQLRL IETAFQHTRD
AVLITDARAR ILRVNPAFET ITGYSAGEVV GRTPRMLQSG RHDGAFYRRF WRALETEGHW
SGEIWNRHRD GHIFPAWQSV SAVKGPDGST THYVSIFTDI SEFKRAEAQI RYLSYHDDLT
GLPNRAYFQA RLDQLIEAAA RDRKQIALVV LDLDRFKTIN DSLGHSVGDE LLCQVAERIQ
DCTGQGDFVA RQGGDEFVVI LADSDAVRAA RVANAMISAI AKPAVAGGRT LIVTPSLGIS
LYPHDAGDSE SLIKSADAAM YHAKSLGRNT YQFFSAEMSA VATERLALEN ALHQALSNGE
FRLYYQPQIE VCSRRLIGLE ALIRWRHPEV GWVPPLRFIP LAEETGIIHR IGRWVLEEAC
RQQREWQAAG LCIVPVAVNL SPLQLQKDDF PEQVEALLSG CRLAPGLLEL ELTETAVMRD
VGRMSDMLRK LKERGTRFSI DDFGTGYSSL GYLNRFPVDK LKIDQSFIRD VTRREDHAAI
TRAIIALAKQ LHLKVVAEGV ETAEQLEFLE RAGCDGAQGF YFSRPVPADE IAGWLSREGA
VQDRR
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