| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1490 |
|---|
| Symbol | dapD |
|---|
| ID | 3104489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | - |
|---|
| Start bp | 1584731 |
|---|
| End bp | 1585546 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637170665 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_113947 |
|---|
| Protein GI | 53804425 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.936665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTGG AAAACATCAT CAACGAAGCT TTCGAGAATC GTGCGCAGAT CAGCCCGGGC
ACGGTGGGTG CCGAAGTGCG TGAGGCGGTG GCAGAGGCAC TGCGGCTGTT GGACAGCGGC
GCGGCCCGCG TCGCCGAGAA GAAAGACGGC GGCTGGGTGG TCAACCAGTG GCTCAAGAAG
GCGGTGCTGC TCTCCTTCCG CATCAACGAC AACCGCGTGA TGGACGGCGG CGAGACGCGC
TATTTCGACA AGGTGGAACC CAAGTTCGGT GGCTTCGGGC CGGAGGAGTT CCGCGCCGCC
GGCGTGCGCG TGGTACCGCC CGCCGCCGTC CGCCGTGGCG CCTACATCGC GCCCGGTGTC
ATCCTGATGC CGTCCTACGT CAACATCGGT GCTTACGTCG ATTCCGGCAC CATGGTCGAC
ACCTGGGCCA CGGTGGGCTC CTGCGCCCAG ATCGGCAAGA ATGTCCACCT CTCCGGCGGC
GTCGGCATCG GCGGCGTGCT GGAACCGCTG CAGGCGGGCC CGACCATCAT CGAGGACAAC
TGCTTCATCG GCGCGCGTTC CGAAATCGTG GAAGGCGTCA TCGTGGAAGA GGGGTCGGTG
ATCTCCATGG GCGTCTACAT CGGTCAGAGC ACCAAGATCT ACAACCGGAT GACCGGCGAG
ATCAGCTACG GTCGGGTGCC CGCCGGCTCC GTCGTGGTGT CCGGCAACCT GCCGGCCAGG
GACGGCAGTC ACAGCCTGTA TTGTGCGGTG ATCATCAAAC AGGTGGATGA GAAGACCCGC
GGCAAGGTCG GTATCAACGA GCTGCTCAGA GACTGA
|
|---|
| Protein sequence | MSLENIINEA FENRAQISPG TVGAEVREAV AEALRLLDSG AARVAEKKDG GWVVNQWLKK
AVLLSFRIND NRVMDGGETR YFDKVEPKFG GFGPEEFRAA GVRVVPPAAV RRGAYIAPGV
ILMPSYVNIG AYVDSGTMVD TWATVGSCAQ IGKNVHLSGG VGIGGVLEPL QAGPTIIEDN
CFIGARSEIV EGVIVEEGSV ISMGVYIGQS TKIYNRMTGE ISYGRVPAGS VVVSGNLPAR
DGSHSLYCAV IIKQVDEKTR GKVGINELLR D
|
|---|
| |