Gene MCA1471 details

Gene Information

• Locus tag: MCA1471
• Symbol: rpoE
• ID: 3102631
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: -
• Start bp: 1561445
• End bp: 1562023
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637170646
• Product: RNA polymerase sigma factor RpoE
• Protein accession: YP_113928
• Protein GI: 53804461
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02939] RNA polymerase sigma factor RpoE

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGATGA GTGAAGAACT GGACGATGAA CTCGTCGGGC GGGTGCAGCG CGGCGACAAA 
AGAGCTTTCG ACTTACTCGT CAGAAAGTAT CAGTACAAAA TCACCCAGCT CATTTCCCGC 
TACATCAAGG ATCCCTACGA ATCCCTGGAT GTGGCGCAAG AAGCCTTTAT CAAGGCTTAC 
CGGGCCCTGC CTGGATTTCG CGGAGACAGC CAGTTCTACA CTTGGCTTTA CCGCATCGCG 
ATCAATACGG CAAAGAATTA CCTCGTCACC CACGCGCGCC GTCCCAGGGA AGACGAATTC 
GACGTCGAAT CGGCGGAACA ATTCGAGAAT GGCCATCGTC TAAAGGATGT CGATACGCCC 
GAAGCGGCGC TCTTGAGTGA CGAGCTGGCG GCAACGATTC AATCGGCGCT AGACGAGTTG 
CCGGAGGAAC TCAAGCTGGC TATAACTCTG AGAGAGCTGG ACGGATTGAG TTACGACGAA 
ATCGCGGAAG TCATGAGCTG CCCGGTCGGC ACCGTCCGCA GCCGTATCTT CAGGGCGAGA 
GAAGCCATAG ACAAACGGCT CCGGCCGTTA CTCGACTGA 

 

Protein sequence

MEMSEELDDE LVGRVQRGDK RAFDLLVRKY QYKITQLISR YIKDPYESLD VAQEAFIKAY 
RALPGFRGDS QFYTWLYRIA INTAKNYLVT HARRPREDEF DVESAEQFEN GHRLKDVDTP 
EAALLSDELA ATIQSALDEL PEELKLAITL RELDGLSYDE IAEVMSCPVG TVRSRIFRAR 
EAIDKRLRPL LD