Gene MCA1471 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMCA1471 
SymbolrpoE 
ID3102631 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylococcus capsulatus str. Bath 
KingdomBacteria 
Replicon accessionNC_002977 
Strand
Start bp1561445 
End bp1562023 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content55% 
IMG OID637170646 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_113928 
Protein GI53804461 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGATGA GTGAAGAACT GGACGATGAA CTCGTCGGGC GGGTGCAGCG CGGCGACAAA 
AGAGCTTTCG ACTTACTCGT CAGAAAGTAT CAGTACAAAA TCACCCAGCT CATTTCCCGC
TACATCAAGG ATCCCTACGA ATCCCTGGAT GTGGCGCAAG AAGCCTTTAT CAAGGCTTAC
CGGGCCCTGC CTGGATTTCG CGGAGACAGC CAGTTCTACA CTTGGCTTTA CCGCATCGCG
ATCAATACGG CAAAGAATTA CCTCGTCACC CACGCGCGCC GTCCCAGGGA AGACGAATTC
GACGTCGAAT CGGCGGAACA ATTCGAGAAT GGCCATCGTC TAAAGGATGT CGATACGCCC
GAAGCGGCGC TCTTGAGTGA CGAGCTGGCG GCAACGATTC AATCGGCGCT AGACGAGTTG
CCGGAGGAAC TCAAGCTGGC TATAACTCTG AGAGAGCTGG ACGGATTGAG TTACGACGAA
ATCGCGGAAG TCATGAGCTG CCCGGTCGGC ACCGTCCGCA GCCGTATCTT CAGGGCGAGA
GAAGCCATAG ACAAACGGCT CCGGCCGTTA CTCGACTGA
 
Protein sequence
MEMSEELDDE LVGRVQRGDK RAFDLLVRKY QYKITQLISR YIKDPYESLD VAQEAFIKAY 
RALPGFRGDS QFYTWLYRIA INTAKNYLVT HARRPREDEF DVESAEQFEN GHRLKDVDTP
EAALLSDELA ATIQSALDEL PEELKLAITL RELDGLSYDE IAEVMSCPVG TVRSRIFRAR
EAIDKRLRPL LD