| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1204 |
|---|
| Symbol | |
|---|
| ID | 3102090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | - |
|---|
| Start bp | 1262770 |
|---|
| End bp | 1266303 |
|---|
| Gene Length | 3534 bp |
|---|
| Protein Length | 1177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637170384 |
|---|
| Product | sensory box histidine kinase/response regulator |
|---|
| Protein accession | YP_113669 |
|---|
| Protein GI | 53804659 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAAG ATCTCACCTC CCCCCCTGCC ATGCGGCAGC GCTTCCTGCG CTCCCTGGGC
AGCATCTGCC TCATCGTCAT CCTGGCCGAA GTCATCGTGA TGACGCTGTT GGGAGCGCTC
CACCGCGGCG GGCTGGAGCT GGTGCGGTGG CAAGAAAGTG CGCTGGATGG ACTGCTGCTC
GGCCTCTTCA GCGCCCCCTT GCTGTGGATC ATGGCGCTGC GGCCCCTCGC CCAGCAGATC
GCCCGGGAAA GCCAGCGCAA CAAGGAGCTC CTGGACGCCC TGGATGCGCA TGCGCTGGTC
AGTATCACCG ACCTGCAGGG ACGGATACTG TACGCCAACG ACAATTTCTG CGCGGTGTCA
CGCTATGGCC GGGAAGAGCT GGTCGGACAG GACCACCGCA TCGTCAATTC CGGTTACCAC
GGCAAGGCCT ACATCCGCGA CATGTGGCGC ACCATCAGCC GGGGAAACAT CTGGCAGGGC
GAGTTCTGCA ACCGCCGTAA GGACGGAACC CGCTACTGGG TCGACAGCAC CATCGTCCCG
CTGATGGACA ATGCTGGCAA GCCGCGGCAG TACATATCCA TCCGCCGCGA CATCACGGCG
CAGAAAGAAG CCGAGGCCCA GCTCGCCCGC CTCAAGCAGG CGATGGACGC CAACAGCGAG
ATGATCCTGC TCACCGACCG CGCCGGACGC ATCATCTATG CGAACCCGGC GCTGTGCCGC
TTCAGCGGAA TGGCGGAAGG GGAATTGCTT GGCCAGAGCC CCAGCATCCT GGACAGCCCG
CTCGCCGATC AAGAGACCCT GGCTGCCATG CAGGAGGCGC TCCAGGCCGG CCAGCCCTGG
TCCGGACGAC TCCTGAACCG GCGCCGGACG GGACCCGCCC CCCATGATGC CGAGGACTAC
TGGGCGGAGA TCAGCACCAC GCCGATCCAT ACCGACGGCA ACGGACTGGT GGGCTACGTC
CAGATCCAGC ACGACGTGAG CGCCCGGGTC GAACGGGAAC GCGCACTGGC GATGGAGCAG
GAGGACACCG CCGCCCGCCT GCGCATCACC GAAACCCTGC AGCAAAGCGC CCCGCTGGAT
GAGCGGTGCC GGCAGGTGCT CCGCATCCTG TTCGAGCTCG GTACCTTCGG CCTGCAGCGA
AAGGGCGGAA TATTCCTCAA GGCGGAGCAT GGGAACTGCC TGAAGCTATT CGTGCTGGAA
GGAAAATTCT GTGACGAATT CGTCCGGCGC GAACAGACCA TCCCCATGGG CGCATGTCTG
TGCGGCCGAA GCGCGGTCTC GGGGGAAATC CTGGTCTCCG ACGACTGTTT CCAGGACCAC
CGGCACGAAC ACCGCTTCGA GGACATGGAA AGCCATGGCC ATTACATCGT GCCCATCGCG
TCCGGCGGCG ATTTGCTGGG AGTGTTGTTC CTTTACACCG ACCCCAACCC CACCCGTAGC
GAAGCACGGA TGGTGATGCT CCGTCAGGTC GGCGAAATGC TGGCGCTGGC GATACTCGAG
GACCGCGCCA AGGCTTCCCT GAAGGCCGCC CACGATGCCG CGGTGGATGC CGCCCAGGCC
AAGAGCGCAT TCCTGGCCAA CATGAGCCAC GAGATCCGCA CGCCGATGAA CGGCGTGCTC
GGCATGCTGG AGCTGCTGAA AGACACTGAC ATGTCCCGCG AGCAGTGGGA TCTGGTCGAA
ACCGCATCGA ATTCCGCCGA ATCCCTGCTC GAAATCATCA ATTCGATTCT CGACTTCTCC
AAGCTCGAAG CGGGCAAGGT CGAAATCGAA CGGACCGAAT TCAATCTGCC GGATCTGGTG
GAAGAGGTCT GCGCTCTGCT AGCCGGCCGG GCCCATGACA AAGGTCTGGA GCTGAACTGC
TTCCTACCCG CGGACCTGCC CAGGATGTGG ATCGGTGACC CGACACGCAT CCGCCAGATA
CTCACCAACC TGCTCGGCAA CTCGGTCAAA TTCACCGAGC GCGGTGAGGT TTCAGTCAAG
GTGATGCAGG GGGAGGCCGG CGCAAAGCGG ACTGACCTGA GTTTCGAGAT CCGGGACACC
GGCATAGGCA TCGCGCCGGA CGTCCAGGCG CGGCTATTCC AGCCGTTCAC CCAGGCCGAT
GGCTCCACCT CCCGGCGCTT CGGCGGCACC GGTCTCGGCC TGTCCATCTG CCGAAACCTG
GTCGAACTCA TGGGCGGGAC CATCGGCCTG GAAAGCGCCC CCGGCCGGGG CAGCCGCTTC
TGGTTCACCC TCCCTCTGGA ACCCCTCCCC GGCGCGTCCG CACCGGCCCT GCCGGACTTC
TCCCACCGGC GGGTGCTGGT GGTGGACGAC AACGCCACCA ACCGTGTCAT CCTGAGCCAT
TATCTGACCC ACTGGGGCCT GGAAGTAGAC GAAGCGGAGC GGGGCGACAC CGCTCTGAAC
CGACTGCGGA CAGCCCTGCA CGAATCGAGG CCCTACGACA TCGTCTTGCT CGATCTCCAC
ATGCCGTACA TGGACGGGCA CGAACTCGCC CGGGCCATGA ATGCAGAACC GGGGCTCAAG
GATACCCCGC GTCTGCTGCT GTCCTCCGGA GGCTTGACCG GCGAAGCCGA GCTTCGTGCC
CTGGGGATCG CACGCAGCCT GCTGAAACCG GTGCGGCAAT CCCTGCTGTT CAACGCCATC
GCGGAAGTCC TCGCTGCCAA AGCCACGGTA CAGCGCCGGC CAGCCGCCAA GACGGAAACC
GTCCTGCCGG CTTATGAAGG CCGCAGAGTG TTGGTCGTGG AAGACAACCG GGTCAACCAG
AAGGTGATCG TCGCCATGCT CGGCAAGTTC GGTATCGTTC CCGACGTCGC CGACAATGGT
CAAGCCGCGC TGGAACTGTT GGCCCGTTCC TCTTACGACC TGGTCCTGAT GGACTGCCAG
ATGCCGGTGC TGGGAGGCTA CGAAGCCACC GGCGAACTGC GGGCCAGAGA GATGTCCGCG
GGAGGGAGAC GCACCCCCGT CGTCGCGCTC ACCGCCCATG CCGCGACCGG CGAACGGGAA
AAATGCCTGG CCGCCGGCAT GGACGACTAT CTCAGCAAGC CCATTTCCAG GGACCGTCTC
GCCGAAGCGC TCGAGCGCTG GCTGGGCCAT CCCGCCGCCC CGGCATCCGC GGAAACCGGG
CAGGGGGCCG TGAACGACGA TGGCGGAGAT CGGCCCGCCG GCCTTTCCTG GAACAGGGAG
GAAACGCTGG CGCGCCTGGA CCACGACGAG GCACTCCTGG CAGAAATGAT CGCTCTCTGT
ATCGAGGAGC TTCCCAGACA TCTCGCCGCC CTCCAGGAAG CGGGCGCGGC CAACGACATC
GCCGCGCTGG CCGATGCGGC GCACGCCATC AAAGGCATGG CGGGGCATTT CTGCGCCGGT
TCTGTCCGGG ACCTGGCCGC GCGGCTCGAA GACCAAGCCC GCAAGGCGGG ATCGATGCCG
GACGCCGCAT CGATCGGCGC ACTGGAGACT GCCGCCGCCC GGTTGCTGGA GGACCTGCAC
GGCGGCTCTC CCGCGGGAGA TCCGGCAAAG GGCACGAACG ATGCTGCGCA ATGA
|
|---|
| Protein sequence | MSEDLTSPPA MRQRFLRSLG SICLIVILAE VIVMTLLGAL HRGGLELVRW QESALDGLLL
GLFSAPLLWI MALRPLAQQI ARESQRNKEL LDALDAHALV SITDLQGRIL YANDNFCAVS
RYGREELVGQ DHRIVNSGYH GKAYIRDMWR TISRGNIWQG EFCNRRKDGT RYWVDSTIVP
LMDNAGKPRQ YISIRRDITA QKEAEAQLAR LKQAMDANSE MILLTDRAGR IIYANPALCR
FSGMAEGELL GQSPSILDSP LADQETLAAM QEALQAGQPW SGRLLNRRRT GPAPHDAEDY
WAEISTTPIH TDGNGLVGYV QIQHDVSARV ERERALAMEQ EDTAARLRIT ETLQQSAPLD
ERCRQVLRIL FELGTFGLQR KGGIFLKAEH GNCLKLFVLE GKFCDEFVRR EQTIPMGACL
CGRSAVSGEI LVSDDCFQDH RHEHRFEDME SHGHYIVPIA SGGDLLGVLF LYTDPNPTRS
EARMVMLRQV GEMLALAILE DRAKASLKAA HDAAVDAAQA KSAFLANMSH EIRTPMNGVL
GMLELLKDTD MSREQWDLVE TASNSAESLL EIINSILDFS KLEAGKVEIE RTEFNLPDLV
EEVCALLAGR AHDKGLELNC FLPADLPRMW IGDPTRIRQI LTNLLGNSVK FTERGEVSVK
VMQGEAGAKR TDLSFEIRDT GIGIAPDVQA RLFQPFTQAD GSTSRRFGGT GLGLSICRNL
VELMGGTIGL ESAPGRGSRF WFTLPLEPLP GASAPALPDF SHRRVLVVDD NATNRVILSH
YLTHWGLEVD EAERGDTALN RLRTALHESR PYDIVLLDLH MPYMDGHELA RAMNAEPGLK
DTPRLLLSSG GLTGEAELRA LGIARSLLKP VRQSLLFNAI AEVLAAKATV QRRPAAKTET
VLPAYEGRRV LVVEDNRVNQ KVIVAMLGKF GIVPDVADNG QAALELLARS SYDLVLMDCQ
MPVLGGYEAT GELRAREMSA GGRRTPVVAL TAHAATGERE KCLAAGMDDY LSKPISRDRL
AEALERWLGH PAAPASAETG QGAVNDDGGD RPAGLSWNRE ETLARLDHDE ALLAEMIALC
IEELPRHLAA LQEAGAANDI AALADAAHAI KGMAGHFCAG SVRDLAARLE DQARKAGSMP
DAASIGALET AAARLLEDLH GGSPAGDPAK GTNDAAQ
|
|---|
| |