| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1123 |
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| Symbol | gspD |
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| ID | 3102943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylococcus capsulatus str. Bath |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002977 |
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| Strand | + |
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| Start bp | 1178358 |
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| End bp | 1180613 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637170308 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_113593 |
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| Protein GI | 53804514 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCAAGA AGCCGGAGTA CTATCCGCGG AAGGGGGCCG TGGTCAATCC GCCGTCCGCC
GGCGGTGGCG GCTACCCGGG TTCCGCCACC ACGTCCTCCG CTGGCGGCGG TGCGACCGGG
AAAGGAGGCG GCCGCACCTC GCCCCGGAAA GAAGGCAAGT ACACCCTCAA TTTCGACGAC
GCCGACCTGT CGGAAGTCAC CAAGGTCATC CTCGGCGATA CGCTGAAGGT GAATTACGTC
CTGAGTCCCA AGGTCACCGG CAAGGTGAGT CTGCAGACCA CCCGGCCGCT GACCGAGGAC
GAGATGATCC CGACGCTGGA GACCCTGCTG CGGATGAACG GGGCGGCGCT GATCCGGGAG
GGCGGCATGT ACAAAATCGA ACCCGACGCC CAGGCGGCGA TCAGCGCCTC CGGCCCCGGG
GTCGGGCTGG GAATGATGGA GCCGGGTTAC CAGTTGCGGG TCATTCCTTT GCGTTACATC
AGCGCCGCGG AAATGCAGAA AGTGCTGGAG CCCATCATGC CGCCCAAGGC CGTGCTGCGG
ATGGACGAGA CCCGCAATCT GGTCATGGTG GCCGGTACGG CGGAAGAGTT GGGCGGCGTC
ATGGAAGCGG TGCAGATTTT CGACGTCGAC TACATGCGGG GCATGTCCGT GGCCCTGTAT
CCGGTCAAGA ACGCCGACGT GCCGACCATC GCCGACGAAC TGACCAAGGT CCTCGGGCTC
GGCGGCAAGG GCGCCATGGG CAACGTGCTG CGCATCCTGC CGATCGAACG CCTCAACGCC
ATCCTCGCCG TGGCTCCTGA GATGCATCTC CTGCACGAAG TGCAGGACTG GATCGAACGG
CTCGACCGCT ACAACACCAC CCGTACCGGC AATGTCCACG TCTATCGCTG CCAGCACGTG
GATGCGGGCG AGCTTGCCCA CACGCTGGGC GGGATCTTCG GAGGCGGCGC GGGACGGCAG
GGGCCTTCGC TGGCGCCAGG GCTGACCGGA ATGGACGTCG GCAGTGGCAT ATCGAGCGCC
TTCGGCTCGG CCTCTGCGAC CGCAGGCGGT TTTGGGGGGT CTTCTGCCGG CTATGGCGGC
TCGGGAGGAT CCTTCGGCGG CTCGGGGAGT TCATTTGGAA GTTCCGGCAG CAGCGGTTCC
AGCATGGGGA GCACGACGGG CAGCATGGGA ACTTCCGGCA GCAGCGGCGG ACTCGGCCGC
TCCGGCAGCG GTGGTTTGGG CGGTTCTGGC GGCGGCCTGG GTACCAGTGG GGGCAGTTTC
GGCGGCGCGC GGTCGGGTGC GGGCGGTCAG GGAGCAAGCA TGACCCAACT CGGCAACAAT
GCGCGGGTCG TCGCCGATCC TGCCAACAAT GCGTTGATCG TGATCGCCAA GCCCCAGGAC
TGGAAGGAGA TCGAAGCGGT GATCAAGGCC TTGGATGTCT TGCCGCTCCA AGTGCTCATC
GACGCCACCA TCGTCGAGAT CAGCCTGAAA AACGATCTCC AGTACGGATT GAAGTGGCTG
ATCAGCAGCG GTAGCAGCAC GGAGGCACTG GGCAGCCCGC TTGCTGCCTT GGTAAAGGAT
TTCATCAACG GGGCCGCATC CGCGAGTGGG GGATTCAGCT ATGCGCTGAT CGCCAACGGC
GGTAATGTCA AGGTTCTGCT TAACCTGTTG GCGCAGGAAA ATCTGGTCAA TGTGATTTCC
TCACCTTCGC TCATGGTTCT GAACAATCAA CAGGCGAAGA TCAATGTCGG TGATCAGGTA
CCGGTGCTAA CGGGTACGAC GGCCAGCGCG ACCATCGGTA CCACCCAGTT CAATCAATTC
CAGCAGCAGC AGTCGGGTGT CACCCTGCAA ATCCGGCCGC GGGTCAATTC AGGCGGCCTC
GTTTCGCTGG AGATATTCCA GGCCATATCT ACTCCTTCTC CGGTCGAAGT CGGAAGCGGA
CAGAAAACCT TCCAATTCGC CAATCGGGAA ATCCAGAGCG TCGTCGCCGT GCCCAACGGG
CAGACGCTGG CCTTGGGGGG ACTGATCTCC GATAAGCGCT CCGAGACCCA GACCGGTCTG
CCATACCTGA ACCAAATCCC GATGATAGGT TGGATGTTCG GGTCCACCGA GATAAAGCCC
GAGCGCACCG AGCTGGTGGT GCTCATCACG CCGCGGGTCG TGGAAAAGAA AGGCGACATC
AACTCGATCA GCAACGAATT CCGCCGCAAG CTGACCAACC TATACAGAGG CGAGCCGGAC
GCCCAGCCGG CGGCGGTGGA GCCTTCGACG CCGTGA
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| Protein sequence | MLKKPEYYPR KGAVVNPPSA GGGGYPGSAT TSSAGGGATG KGGGRTSPRK EGKYTLNFDD
ADLSEVTKVI LGDTLKVNYV LSPKVTGKVS LQTTRPLTED EMIPTLETLL RMNGAALIRE
GGMYKIEPDA QAAISASGPG VGLGMMEPGY QLRVIPLRYI SAAEMQKVLE PIMPPKAVLR
MDETRNLVMV AGTAEELGGV MEAVQIFDVD YMRGMSVALY PVKNADVPTI ADELTKVLGL
GGKGAMGNVL RILPIERLNA ILAVAPEMHL LHEVQDWIER LDRYNTTRTG NVHVYRCQHV
DAGELAHTLG GIFGGGAGRQ GPSLAPGLTG MDVGSGISSA FGSASATAGG FGGSSAGYGG
SGGSFGGSGS SFGSSGSSGS SMGSTTGSMG TSGSSGGLGR SGSGGLGGSG GGLGTSGGSF
GGARSGAGGQ GASMTQLGNN ARVVADPANN ALIVIAKPQD WKEIEAVIKA LDVLPLQVLI
DATIVEISLK NDLQYGLKWL ISSGSSTEAL GSPLAALVKD FINGAASASG GFSYALIANG
GNVKVLLNLL AQENLVNVIS SPSLMVLNNQ QAKINVGDQV PVLTGTTASA TIGTTQFNQF
QQQQSGVTLQ IRPRVNSGGL VSLEIFQAIS TPSPVEVGSG QKTFQFANRE IQSVVAVPNG
QTLALGGLIS DKRSETQTGL PYLNQIPMIG WMFGSTEIKP ERTELVVLIT PRVVEKKGDI
NSISNEFRRK LTNLYRGEPD AQPAAVEPST P
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