Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCA1067 |
Symbol | rpoC |
ID | 3102413 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylococcus capsulatus str. Bath |
Kingdom | Bacteria |
Replicon accession | NC_002977 |
Strand | + |
Start bp | 1118854 |
End bp | 1123056 |
Gene Length | 4203 bp |
Protein Length | 1400 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637170256 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | YP_113542 |
Protein GI | 53804615 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAGATT TGATCAATTT TCTGAAGCGC CAGACGCAAA GCGAAGAGTT CGATGCGATC CGCATCAGCC TGGCATCGCC CGACATGATC CGTTCCTGGT CCTATGGCGA GGTGAAAAAG CCCGAGACCA TCAACTACCG GACTTTCAAG CCGGAGCGCG ACGGTCTGTT CTGCGCCAAG ATCTTCGGAC CGGTGAGCGA CTACGAATGC CTGTGCGGCA AGTACAAACG TCTCAAGCAC CGGGGGGTGA TCTGCGAAAA ATGCGGCGTG GAAGTCACCC TTTCCAAGGT GCGGCGGGAA CGCATGGGAC ACATCGAACT GGCCAGTCCC GTTGCCCATA TTTGGTTCCT CAAGTCGCTG CCTTCGCGCA TTGCGCTGCT GCTCGACATG CAGTTGCGCG AAATCGAACG GGTACTCTAT TTCGAATCCT ATGTCGTCAT CGATCCGGGC ATGACTCCGC TCACCCGGGG CCAGCTGCTC GGCGAGGAGG AATATCAGAA GCTGGTCGAA CAATACGACG ACGAGTTCAC CGCCAAGATG GGGGCCGAAG CCATCCGCGA ATTGCTGCGC ACCATGGATC TCCACGCCGA GGTCGTGCAG TTGCGGGAGG AAATCAACGG CACCAACTCC GAGACCAAGA TCAAGAAGTA CACCAAGCGG TTGAAGGCGA TCGAATCGAT GCTGGCGTCC AACAACCGGC CGGAGTGGAT GATCCTCACC GTGCTGCCTG TGCTGCCGCC GGACCTGCGT CCGCTGGTGC CGCTGGATGG CGGTCGCTTC GCCACCAGCG ATCTCAACGA CCTGTACCGC CGCGTCATCA ATCGTAACAA CCGTCTCAAG CGGCTGCTCG ACCTCAATGC GCCCGACATC ATCGTGCGCA ACGAGAAGCG TATGCTGCAG GAATCGGTCG ATGCGCTGCT GGACAACGGC CGCCGTGGCC GCGCGATCAC CGGTTCCAAC AAGCGTCCGC TCAAGTCCCT GGCCGATATG ATCAAGGGCA AGCAGGGCCG CTTCCGTCAG AATCTCCTGG GAAAGCGCGT CGACTACTCC GGCCGTTCCG TGATCGTGGT GGGGCCGACC TTGCGACTGC ATCAATGCGG TCTCCCCAAG AAGATGGCGC TGGAGCTGTT CAAGCCGTTC ATCTTCAGCA AGCTGCAGTT CCGCGGCCTG GCCACGACCA TCAAGGCGGC CAAGAAGATG GTGGAGCGCG AGGCGCCCGA GGTCTGGGAC ATCCTGGACG AGGTGATCCG CGAACATCCG GTCATGCTGA ACCGTGCGCC GACCCTGCAC CGGCTGGGCA TCCAGGCGTT CGAGCCGATC CTGATCGAAG GCAAGGCGAT CCAGCTTCAT CCGCTGGTAT GCACCGCCTT CAATGCCGAC TTCGACGGCG ACCAGATGGC CGTGCATGTG CCGCTTTCGC TGGAAGCGCA GCTCGAAGCC CGTTCTCTGA TGATGGCGAC CAACAACATT CTGTCCCCGG CCAACGGTGA GCCCATCATC AATCCCACTC AGGACGTCGT CATGGGGCTG TACTACATGA GCCGGGAGCG CTTGTTCGCC AAAGGCGAGG GCATGACCTT CGCCAGCGTC GACGAGGCCG AACAGGCGTT CCTCAATGGC GCCGTTGACC TGCATGCCAA GGTGGTGGTC CGTGTGCGGG AGGTCGTGGT GGGCGAGGGC GGGGAGCGTA CCGAGAGCAT CAAGCGGGTC CAGACGACGG TGGGGCGTGC GCTGATCTGG AACATCGTGC CGGAGGGCAT ACCGTTCGAA ATGGTCAACG TCGATATGAC CAAGAAGGCC ATTTCCCGTC TGATCAACCA CGCCTATCGA ACCCTGGGTA TCAAGGCCAG CGTCATCTTC GCCGACCAGT TGATGTATCT CGGCTTTTCC CATGCGACGA GGGCGGGTGT GTCGTTCGGC GTCGAAGACA TGGAGATCCC CGTCCGAAAG GATGAAATCA TCCAGGCGGC GGAGCGTGAA GTGAAGGAAA TCCAGAACCA GTTTGCCTCG GGCCTGGTGA CGGACGGCGA ACGCTACAAC AAGGTCGTCG ACATCTGGTC GCATGCCAAC GACCAGGTGG CCAAAGTGAT GATGGAAGGA CTCGGCGTGG ACGAGGTGAC CGTTGGAAAC GGCGAGACCA TCAAGCAGAA GTCGTTCAAT TCTATCTTCA TGATGGCCGA CTCCGGTGCC CGCGGCTCGG CGGCGCAGAT CCGCCAGCTG GCCGGCATGC GCGGCCTCAT GGCCAAGCCG GACGGCTCCA TCATCGAGAC GCCGATCACA GCGAACTTCC GGGAAGGACT GACGGTATTG CAGTACTTCA TTTCGACCCA TGGCGCCCGC AAGGGGCTCG CCGACACCGC ACTCAAGACG GCCAACTCCG GCTACCTGAC GCGCCGCCTG GTGGACGTCG CTCAGGATCT GGTGATCACC GAGGATGACT GCGGGACGAC GGACGGTTTG CAGATGGCCC CGTTGATCGA AGGCGGGGAT GTGGTCGAGC CATTGGCGGA ACGGGTGCTG GGACGGGTAC TGGCCGAGCA CGCGGTCGAT CCCGCGAGCG GAGACGTGCT GCTCGAAGCC GGTTCGATGC TGGACGAGCG GGCGGTGCAG CTACTCGAAC AGCACGGCGT CGACAACGTC CGGGTGCGCT CCGTCATCAC CTGCAAGACC CGTTATGGGG TCTGTGCCTC GTGCTATGGC CGCGACCTCG GTCGTGGCCA CAAGGTCAAC ATCGGCGAGG CGATCGGCGT GATCGCGGCG CAGTCGATCG GCGAGCCGGG CACGCAGCTC ACCATGCGTA CCTTCCACAT CGGTGGTGCG GCCTCGCGGT CGGCGGCGAT CAGCAACGTC GAGGTGAAGT CGAGCGGACA GATCCGGCTG ACCAATCTCA AGACCGTAGT CAACCGGGAC AATGCGCTGG TCGCGGTCTC GCGTTCCGGC GAAATCAGCG TGATCGACGA ACACGGCCGT GAGCGTGAGC GCTACAAGAT CCCCTACGGA GCGGTTCTGT CGGTGCGGGA GGGCGGCGCG GTCAAGGCAG GCCAGATCGT GGTGAACTGG GATCCGCATA CCCATCCGGT CATCTCCGAG GTCCGGGGCC GCGCCAAGCT GATCGATTTC GTCGAAGGCG TTACCGTGCG TGAACAGTCC GACGAAATGA CCGGCCTGAG CTCGATGGTG GTCATCGATC CCAAGCAGCG CGGCGGCGCG GGCAAGGAAC TGCGGCCGTT GGTCAAACTG GTGGACGAGG AGGGCAACGA CATCTTCATT CCCTCGACCG AAATCACGGC GCAGTACTTC CTGCCGGCCG GAGCGATCAT CGGCATCCGC GACGGCGATC TGGTCGAAGT CGGCGATGTG CTCGCGAGGA TTCCTCAGGA GTCCAGCAAG ACGCGTGACA TCACCGGTGG TCTGCCGCGC GTCGCGGATC TGTTCGAAGC GCGCAAGACC AAGGATCCCG CCATCCTGGC CGAGGCGACC GGCACGGTGT CCTTCGGCAA GGAAACCAAG GGCAAGCGCC GCCTCATCAT CACCGACGCG AGCGGCGAGC AGCACGAGGT GATGGTACCG AAATGGCGCA ACATCACGGT GTTCGAAGGC GAGCACGTGG AACAGGGCGA AACCATCGCC GAAGGTGAAC TGACGCCGCA CGACATTCTG CGGCTGCGCG GCACCGCCGA GCTGGCTTCC TACCTGGTCA AGGAAATCCA GGATGTGTAT CGGCTGCAGG GTGTAAAGAT CAACGACAAG CACATCGAGG TGATCATCCG CCAGATGCTG CGGAAAGTGG AAATCACCGA TCCCGGTGAT TCCAGCTTCC TGCGAGGTGA ACAGGTGGAC CGGTCGCGGC TCCTGGAGGA GAACGACCGC CTGGAAGAAG AGGGCAAGGT GCCCGCGTGT TACGAACCGG TGCTGCTGGG TATCACCAAG GCCTCCTTGA GCACCGAGTC GTTCATCTCC GCGGCGTCGT TCCAGGAAAC CACGCGCGTG CTGACCGAAG CGGCGATCCG GGGATCCACC GACCGCTTGC AGGGCCTGAA GGAGAACGTC ATCGTGGGAC GTCTGATTCC GGCGGGAACC GGTCTGGCCT ACCATACGGA GCGCAGGGAA CGGGCAAAGC TCGGCGAGGT GACGGAACCC GAAACCCCCA TCATCGATAC GGCTGAGGTG GAAGAGGCCC TGAAGCAAGC GTTCAGCCTG TGA
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Protein sequence | MKDLINFLKR QTQSEEFDAI RISLASPDMI RSWSYGEVKK PETINYRTFK PERDGLFCAK IFGPVSDYEC LCGKYKRLKH RGVICEKCGV EVTLSKVRRE RMGHIELASP VAHIWFLKSL PSRIALLLDM QLREIERVLY FESYVVIDPG MTPLTRGQLL GEEEYQKLVE QYDDEFTAKM GAEAIRELLR TMDLHAEVVQ LREEINGTNS ETKIKKYTKR LKAIESMLAS NNRPEWMILT VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLNAPDI IVRNEKRMLQ ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVIVVGPT LRLHQCGLPK KMALELFKPF IFSKLQFRGL ATTIKAAKKM VEREAPEVWD ILDEVIREHP VMLNRAPTLH RLGIQAFEPI LIEGKAIQLH PLVCTAFNAD FDGDQMAVHV PLSLEAQLEA RSLMMATNNI LSPANGEPII NPTQDVVMGL YYMSRERLFA KGEGMTFASV DEAEQAFLNG AVDLHAKVVV RVREVVVGEG GERTESIKRV QTTVGRALIW NIVPEGIPFE MVNVDMTKKA ISRLINHAYR TLGIKASVIF ADQLMYLGFS HATRAGVSFG VEDMEIPVRK DEIIQAAERE VKEIQNQFAS GLVTDGERYN KVVDIWSHAN DQVAKVMMEG LGVDEVTVGN GETIKQKSFN SIFMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLTVL QYFISTHGAR KGLADTALKT ANSGYLTRRL VDVAQDLVIT EDDCGTTDGL QMAPLIEGGD VVEPLAERVL GRVLAEHAVD PASGDVLLEA GSMLDERAVQ LLEQHGVDNV RVRSVITCKT RYGVCASCYG RDLGRGHKVN IGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRSAAISNV EVKSSGQIRL TNLKTVVNRD NALVAVSRSG EISVIDEHGR ERERYKIPYG AVLSVREGGA VKAGQIVVNW DPHTHPVISE VRGRAKLIDF VEGVTVREQS DEMTGLSSMV VIDPKQRGGA GKELRPLVKL VDEEGNDIFI PSTEITAQYF LPAGAIIGIR DGDLVEVGDV LARIPQESSK TRDITGGLPR VADLFEARKT KDPAILAEAT GTVSFGKETK GKRRLIITDA SGEQHEVMVP KWRNITVFEG EHVEQGETIA EGELTPHDIL RLRGTAELAS YLVKEIQDVY RLQGVKINDK HIEVIIRQML RKVEITDPGD SSFLRGEQVD RSRLLEENDR LEEEGKVPAC YEPVLLGITK ASLSTESFIS AASFQETTRV LTEAAIRGST DRLQGLKENV IVGRLIPAGT GLAYHTERRE RAKLGEVTEP ETPIIDTAEV EEALKQAFSL
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