Gene MCA1067 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMCA1067 
SymbolrpoC 
ID3102413 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylococcus capsulatus str. Bath 
KingdomBacteria 
Replicon accessionNC_002977 
Strand
Start bp1118854 
End bp1123056 
Gene Length4203 bp 
Protein Length1400 aa 
Translation table11 
GC content62% 
IMG OID637170256 
ProductDNA-directed RNA polymerase subunit beta' 
Protein accessionYP_113542 
Protein GI53804615 
COG category[K] Transcription 
COG ID[COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit 
TIGRFAM ID[TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAAGATT TGATCAATTT TCTGAAGCGC CAGACGCAAA GCGAAGAGTT CGATGCGATC 
CGCATCAGCC TGGCATCGCC CGACATGATC CGTTCCTGGT CCTATGGCGA GGTGAAAAAG
CCCGAGACCA TCAACTACCG GACTTTCAAG CCGGAGCGCG ACGGTCTGTT CTGCGCCAAG
ATCTTCGGAC CGGTGAGCGA CTACGAATGC CTGTGCGGCA AGTACAAACG TCTCAAGCAC
CGGGGGGTGA TCTGCGAAAA ATGCGGCGTG GAAGTCACCC TTTCCAAGGT GCGGCGGGAA
CGCATGGGAC ACATCGAACT GGCCAGTCCC GTTGCCCATA TTTGGTTCCT CAAGTCGCTG
CCTTCGCGCA TTGCGCTGCT GCTCGACATG CAGTTGCGCG AAATCGAACG GGTACTCTAT
TTCGAATCCT ATGTCGTCAT CGATCCGGGC ATGACTCCGC TCACCCGGGG CCAGCTGCTC
GGCGAGGAGG AATATCAGAA GCTGGTCGAA CAATACGACG ACGAGTTCAC CGCCAAGATG
GGGGCCGAAG CCATCCGCGA ATTGCTGCGC ACCATGGATC TCCACGCCGA GGTCGTGCAG
TTGCGGGAGG AAATCAACGG CACCAACTCC GAGACCAAGA TCAAGAAGTA CACCAAGCGG
TTGAAGGCGA TCGAATCGAT GCTGGCGTCC AACAACCGGC CGGAGTGGAT GATCCTCACC
GTGCTGCCTG TGCTGCCGCC GGACCTGCGT CCGCTGGTGC CGCTGGATGG CGGTCGCTTC
GCCACCAGCG ATCTCAACGA CCTGTACCGC CGCGTCATCA ATCGTAACAA CCGTCTCAAG
CGGCTGCTCG ACCTCAATGC GCCCGACATC ATCGTGCGCA ACGAGAAGCG TATGCTGCAG
GAATCGGTCG ATGCGCTGCT GGACAACGGC CGCCGTGGCC GCGCGATCAC CGGTTCCAAC
AAGCGTCCGC TCAAGTCCCT GGCCGATATG ATCAAGGGCA AGCAGGGCCG CTTCCGTCAG
AATCTCCTGG GAAAGCGCGT CGACTACTCC GGCCGTTCCG TGATCGTGGT GGGGCCGACC
TTGCGACTGC ATCAATGCGG TCTCCCCAAG AAGATGGCGC TGGAGCTGTT CAAGCCGTTC
ATCTTCAGCA AGCTGCAGTT CCGCGGCCTG GCCACGACCA TCAAGGCGGC CAAGAAGATG
GTGGAGCGCG AGGCGCCCGA GGTCTGGGAC ATCCTGGACG AGGTGATCCG CGAACATCCG
GTCATGCTGA ACCGTGCGCC GACCCTGCAC CGGCTGGGCA TCCAGGCGTT CGAGCCGATC
CTGATCGAAG GCAAGGCGAT CCAGCTTCAT CCGCTGGTAT GCACCGCCTT CAATGCCGAC
TTCGACGGCG ACCAGATGGC CGTGCATGTG CCGCTTTCGC TGGAAGCGCA GCTCGAAGCC
CGTTCTCTGA TGATGGCGAC CAACAACATT CTGTCCCCGG CCAACGGTGA GCCCATCATC
AATCCCACTC AGGACGTCGT CATGGGGCTG TACTACATGA GCCGGGAGCG CTTGTTCGCC
AAAGGCGAGG GCATGACCTT CGCCAGCGTC GACGAGGCCG AACAGGCGTT CCTCAATGGC
GCCGTTGACC TGCATGCCAA GGTGGTGGTC CGTGTGCGGG AGGTCGTGGT GGGCGAGGGC
GGGGAGCGTA CCGAGAGCAT CAAGCGGGTC CAGACGACGG TGGGGCGTGC GCTGATCTGG
AACATCGTGC CGGAGGGCAT ACCGTTCGAA ATGGTCAACG TCGATATGAC CAAGAAGGCC
ATTTCCCGTC TGATCAACCA CGCCTATCGA ACCCTGGGTA TCAAGGCCAG CGTCATCTTC
GCCGACCAGT TGATGTATCT CGGCTTTTCC CATGCGACGA GGGCGGGTGT GTCGTTCGGC
GTCGAAGACA TGGAGATCCC CGTCCGAAAG GATGAAATCA TCCAGGCGGC GGAGCGTGAA
GTGAAGGAAA TCCAGAACCA GTTTGCCTCG GGCCTGGTGA CGGACGGCGA ACGCTACAAC
AAGGTCGTCG ACATCTGGTC GCATGCCAAC GACCAGGTGG CCAAAGTGAT GATGGAAGGA
CTCGGCGTGG ACGAGGTGAC CGTTGGAAAC GGCGAGACCA TCAAGCAGAA GTCGTTCAAT
TCTATCTTCA TGATGGCCGA CTCCGGTGCC CGCGGCTCGG CGGCGCAGAT CCGCCAGCTG
GCCGGCATGC GCGGCCTCAT GGCCAAGCCG GACGGCTCCA TCATCGAGAC GCCGATCACA
GCGAACTTCC GGGAAGGACT GACGGTATTG CAGTACTTCA TTTCGACCCA TGGCGCCCGC
AAGGGGCTCG CCGACACCGC ACTCAAGACG GCCAACTCCG GCTACCTGAC GCGCCGCCTG
GTGGACGTCG CTCAGGATCT GGTGATCACC GAGGATGACT GCGGGACGAC GGACGGTTTG
CAGATGGCCC CGTTGATCGA AGGCGGGGAT GTGGTCGAGC CATTGGCGGA ACGGGTGCTG
GGACGGGTAC TGGCCGAGCA CGCGGTCGAT CCCGCGAGCG GAGACGTGCT GCTCGAAGCC
GGTTCGATGC TGGACGAGCG GGCGGTGCAG CTACTCGAAC AGCACGGCGT CGACAACGTC
CGGGTGCGCT CCGTCATCAC CTGCAAGACC CGTTATGGGG TCTGTGCCTC GTGCTATGGC
CGCGACCTCG GTCGTGGCCA CAAGGTCAAC ATCGGCGAGG CGATCGGCGT GATCGCGGCG
CAGTCGATCG GCGAGCCGGG CACGCAGCTC ACCATGCGTA CCTTCCACAT CGGTGGTGCG
GCCTCGCGGT CGGCGGCGAT CAGCAACGTC GAGGTGAAGT CGAGCGGACA GATCCGGCTG
ACCAATCTCA AGACCGTAGT CAACCGGGAC AATGCGCTGG TCGCGGTCTC GCGTTCCGGC
GAAATCAGCG TGATCGACGA ACACGGCCGT GAGCGTGAGC GCTACAAGAT CCCCTACGGA
GCGGTTCTGT CGGTGCGGGA GGGCGGCGCG GTCAAGGCAG GCCAGATCGT GGTGAACTGG
GATCCGCATA CCCATCCGGT CATCTCCGAG GTCCGGGGCC GCGCCAAGCT GATCGATTTC
GTCGAAGGCG TTACCGTGCG TGAACAGTCC GACGAAATGA CCGGCCTGAG CTCGATGGTG
GTCATCGATC CCAAGCAGCG CGGCGGCGCG GGCAAGGAAC TGCGGCCGTT GGTCAAACTG
GTGGACGAGG AGGGCAACGA CATCTTCATT CCCTCGACCG AAATCACGGC GCAGTACTTC
CTGCCGGCCG GAGCGATCAT CGGCATCCGC GACGGCGATC TGGTCGAAGT CGGCGATGTG
CTCGCGAGGA TTCCTCAGGA GTCCAGCAAG ACGCGTGACA TCACCGGTGG TCTGCCGCGC
GTCGCGGATC TGTTCGAAGC GCGCAAGACC AAGGATCCCG CCATCCTGGC CGAGGCGACC
GGCACGGTGT CCTTCGGCAA GGAAACCAAG GGCAAGCGCC GCCTCATCAT CACCGACGCG
AGCGGCGAGC AGCACGAGGT GATGGTACCG AAATGGCGCA ACATCACGGT GTTCGAAGGC
GAGCACGTGG AACAGGGCGA AACCATCGCC GAAGGTGAAC TGACGCCGCA CGACATTCTG
CGGCTGCGCG GCACCGCCGA GCTGGCTTCC TACCTGGTCA AGGAAATCCA GGATGTGTAT
CGGCTGCAGG GTGTAAAGAT CAACGACAAG CACATCGAGG TGATCATCCG CCAGATGCTG
CGGAAAGTGG AAATCACCGA TCCCGGTGAT TCCAGCTTCC TGCGAGGTGA ACAGGTGGAC
CGGTCGCGGC TCCTGGAGGA GAACGACCGC CTGGAAGAAG AGGGCAAGGT GCCCGCGTGT
TACGAACCGG TGCTGCTGGG TATCACCAAG GCCTCCTTGA GCACCGAGTC GTTCATCTCC
GCGGCGTCGT TCCAGGAAAC CACGCGCGTG CTGACCGAAG CGGCGATCCG GGGATCCACC
GACCGCTTGC AGGGCCTGAA GGAGAACGTC ATCGTGGGAC GTCTGATTCC GGCGGGAACC
GGTCTGGCCT ACCATACGGA GCGCAGGGAA CGGGCAAAGC TCGGCGAGGT GACGGAACCC
GAAACCCCCA TCATCGATAC GGCTGAGGTG GAAGAGGCCC TGAAGCAAGC GTTCAGCCTG
TGA
 
Protein sequence
MKDLINFLKR QTQSEEFDAI RISLASPDMI RSWSYGEVKK PETINYRTFK PERDGLFCAK 
IFGPVSDYEC LCGKYKRLKH RGVICEKCGV EVTLSKVRRE RMGHIELASP VAHIWFLKSL
PSRIALLLDM QLREIERVLY FESYVVIDPG MTPLTRGQLL GEEEYQKLVE QYDDEFTAKM
GAEAIRELLR TMDLHAEVVQ LREEINGTNS ETKIKKYTKR LKAIESMLAS NNRPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLNAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVIVVGPT
LRLHQCGLPK KMALELFKPF IFSKLQFRGL ATTIKAAKKM VEREAPEVWD ILDEVIREHP
VMLNRAPTLH RLGIQAFEPI LIEGKAIQLH PLVCTAFNAD FDGDQMAVHV PLSLEAQLEA
RSLMMATNNI LSPANGEPII NPTQDVVMGL YYMSRERLFA KGEGMTFASV DEAEQAFLNG
AVDLHAKVVV RVREVVVGEG GERTESIKRV QTTVGRALIW NIVPEGIPFE MVNVDMTKKA
ISRLINHAYR TLGIKASVIF ADQLMYLGFS HATRAGVSFG VEDMEIPVRK DEIIQAAERE
VKEIQNQFAS GLVTDGERYN KVVDIWSHAN DQVAKVMMEG LGVDEVTVGN GETIKQKSFN
SIFMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLTVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVIT EDDCGTTDGL QMAPLIEGGD VVEPLAERVL
GRVLAEHAVD PASGDVLLEA GSMLDERAVQ LLEQHGVDNV RVRSVITCKT RYGVCASCYG
RDLGRGHKVN IGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRSAAISNV EVKSSGQIRL
TNLKTVVNRD NALVAVSRSG EISVIDEHGR ERERYKIPYG AVLSVREGGA VKAGQIVVNW
DPHTHPVISE VRGRAKLIDF VEGVTVREQS DEMTGLSSMV VIDPKQRGGA GKELRPLVKL
VDEEGNDIFI PSTEITAQYF LPAGAIIGIR DGDLVEVGDV LARIPQESSK TRDITGGLPR
VADLFEARKT KDPAILAEAT GTVSFGKETK GKRRLIITDA SGEQHEVMVP KWRNITVFEG
EHVEQGETIA EGELTPHDIL RLRGTAELAS YLVKEIQDVY RLQGVKINDK HIEVIIRQML
RKVEITDPGD SSFLRGEQVD RSRLLEENDR LEEEGKVPAC YEPVLLGITK ASLSTESFIS
AASFQETTRV LTEAAIRGST DRLQGLKENV IVGRLIPAGT GLAYHTERRE RAKLGEVTEP
ETPIIDTAEV EEALKQAFSL