| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1066 |
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| Symbol | rpoB |
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| ID | 3102147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylococcus capsulatus str. Bath |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002977 |
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| Strand | + |
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| Start bp | 1114712 |
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| End bp | 1118788 |
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| Gene Length | 4077 bp |
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| Protein Length | 1358 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637170255 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_113541 |
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| Protein GI | 53804616 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.369234 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTACT CGTTTACCGA GAAAAAACGA ATTCGCAAGA GTTTCGGAAA GCGTCAGGAC
GTGCTGGAGG TCCCCTATCT TCTGGCGACA CAGGTTGACT CGTACCGGCG GTTTTTGCAA
CTCGACAAGC AGCCCGCCGC CCGGAGCGAC GAAGGTCTGC ATGCGGCGTT GAAGTCGGTT
TTCCCGATCA AGAGCCATTC CGGCAACATC GTACTCGAAT ATGTGAGTTA CCGGCTGGGC
GACCCGGTGT TCGACGTCAA GGAATGCCAG CAGCGTGGAA CCACCTACGC CGCCCCGCTG
CGCGTGCTCG TCCGTCTGGT GGTCTACGAC AAGGATGCGC CGGTGGGCGC CAAGGTCGTC
AGAGACATCA AGGAGCAGGA GATCTACATG GGCGAAATTC CGCTCATGAC CGACAACGGC
ACGTTCGTCA TCAACGGTAC CGAGCGGGTG ATCGTTTCCC AACTGCACCG TTCGCCCGGC
GTATTTTTCG ACCATGATCG GGGAAAGACC CATTCTTCGG GAAAGCTGCT GTTCAATGCC
AGAATCATCC CCTACCGCGG GTCCTGGCTG GACTTCGAAT TCGACCACAA GGACTGCGTT
TACGTCCGTA TCGACAGGCG TCGCAAGCTG CCCGCCACGG TGTTGCTGCG AGCCCTGGGC
TATGACAACG AGCAGATCAT CGCCGAGTTT TTCGACACCA ACCGTTTCCT GCTCTCATCC
GCCGGCATTC AGCTGGAACT GATACCCGAG CGGCTGCGCG GCGATATCGC CAGCTTCGAC
ATTCGGCTTG GCGATCAGAT CGTGGTCGAG AAGGACCACC GGATCACGGC GCGTCACATC
CGGATGCTGC AAAAGGAGAA CGTGAACCTC CTCGACGTCC CCAAGGACTA CCTGTACGGC
AAGATTCTTG CCCACAACGT CGTGGATACT TCGACGGGCG AACTGATCGC CAAGGTGAAT
CAGGAGATCA CGGAGGATGT CTATGCGCGT CTCGTGGCTG CGGCCATCCC CGAGATCCGT
ACGCTCTATG TGAACGATCT CGACCGCGGT CCGTACATTT CCAATACCAT GCGCATCGAT
CTGACCGAGA CGCAGCTGGA TGCCCTGGTG GAAATCTACC GGATGATGCG GCCGGGCGAA
CCGCCGACCA AGGAGGCCGC CCAGACCCTG TTCGAAAATC TGTTTTTCTC GGCCGAACGC
TATGATCTGT CGGCTGTCGG CCGGATGAAG TTCAACCGGC GCCTGGGGCG GACCGATCCT
ACCGGCCCCG GCGTGCTGGA AAACGATGAC ATCATCGCGG TGCTGAAGGA ACTGATCAAC
ATCCGTAACG GGGGGGGCAC GGTCGACGAC ATCGACCATC TGGGTAACCG CCGCGTCCGG
TCCGTGGGGG AGATGGTGGA GAATCAGTTC AGGCTCGGGC TGGTCCGGGT CGAACGGGCC
GTGAAGGAGC GTCTGTCGCT GCCCGACGCC GATGGTCTGA TGCCACAGGA GATCATCAAC
GCCAAACCGG TGGCCGCTTC CATCAAGGAA TTCTTCGGTT CGAGCCAGCT TTCGCAGTTC
ATGGACCAGA ACAATCCGTT GTCGGAGGTC ACTCACAAGC GCCGTGTCTC GGCTCTGGGG
CCGGGGGGGC TGGCGCGTGA GCGCGCCGGC TTCGAAGTGC GCGACGTGCA TACCACCCAC
TACGGCCGTG TCTGTCCGAT CGAAACGCCC GAAGGTCCGA ACATCGGCCT GATCAACTCG
CTCGCGGTCT ACTCGCGCAC CAACGAATAC GGCTTTCTGG AGACGCCGTA TCGAAAGGTG
ATCGACGGCC GGGTGACCGA TCAGATCGAG TACCTGTCGG CTATCGAGGA GGGCCAGTAC
TACATTGCTC AGGCCAGCGC CTCGGTCGAT GAAAACGGCA TGCTCAAGGA TGAACTGGTG
TCGTGTCGCC ACAAGGATGA ATTCACCCTG GCGTCGCGGG AAAACATCAA CTACATGGAT
GTGTCGTCCA AACAGATCGT GTCGGTCGCG GCCTCGCTGA TCCCCTTCCT CGAACACGAT
GATGCCAACC GCGCCCTGAT GGGCTCGAAC ATGCAGCGGC AGGCCGTCCC GACGCTGCGT
ACGGAGAAGC CTCTGGTGGG CACGGGCATG GAACGCATCG TCGCCCGCGA TTCCGGCGTG
GCGGTCGTCG CCAAGCGCGG TGGCACGGTC GAGTTCGTGG ACGCCAGCCG CATCGTGGTC
CGGGTGAACG ACGAGGAGAC CGAGGCGGGG GTTCCGGGTG TGGATATCTA CAACCTGACC
AAATACACCC GTTCCAACCA GAACACCTGT ATTAACCAGA GGCCGTTGGT TAAGCCGGGC
GACGTCGTGG CCCGCAACGA CGTGCTGGCG GATGGTCCTT CGACCGACAT GGGCGAACTG
GCGCTGGGCC AGAATCTGCT GGTCGCGTTC ATGCCCTGGA ACGGTTACAA CTTCGAAGAC
TCGATCCTGA TTTCGGAACG CGTGGTGCAG GACGACCGTT TCACGACCAT CCACATCGAG
GAGAAGACCT GCGTCGCTCG AGACACCAAA CTGGGGCCCG AGGAAATCAC CGCCGACATT
CCGAACGTTG GGGAGGCCGC GCTGTCCAAG CTGGACGAGT CGGGTATCGT CTACATCGGC
GCCGAGGTCA AGGCCGGCGA CATCCTGGTG GGCAAGGTGA CGCCCAAGGG CGAAACCCAG
CTCACCCCGG AGGAGAAGCT GCTGCGAGCG ATCTTCGGTG AGAAGGCCTC GGATGTGAAG
GACACTTCGC TGCGCGTGCC TTCGGGTATG GACGGCACGG TCATAGACGT GCAGGTCTTC
ACCCGCGACG GCGTGAAGAA GGATGAACGC GCCCGTCAGA TCGAGGAAGC CGAGATTGAG
AGGGTTCGCA AGGATCTGAA CGATCAGCTC CGTATCATCG AGAAGGACTT TTACCAGCGG
GCCGAGCAGA TGGTTCTGGG CAAGGTCGCC GACATGGGGC CGGGCGGTCT GAAGCGCGGC
GCCACCATCA CCCGGGAATA CCTGGATTCG ATCAAGCCCG CCCAGTGGCT GGAGATCCGG
TTGCAGGACG AAGACGTCAA TCTTCAGATC GAAGCGATCG CCGAGCAGAT CGCCCAGCAG
CGCGAGGAAA TCGCGAAGCG GCTCGAAGAG AAGCGCCGCA AGATCACCAT GGGTGACGAC
CTCGCTCCGG GTGTGCTCAA GATGGTAAAG GTGTACCTGG CCGTCAAGCG CCGTATTCAG
CCGGGCGACA AGATGGCCGG CCGCCACGGG AACAAAGGTG TGATTTCCCG CATCGTACCG
GTGGAAGACA TGCCGTATTC GGCTGACGGT ACGCCGGTCG ACATCGTGTT GAACCCACTG
GGCGTGCCTT CGCGCATGAA CGTAGGCCAG GTGCTCGAGA CCCATCTCGG CTGGGCGGCC
AAGGGTGTGG GCCTGAAGAT CGGGCGGATG CTGGAGGCCA AGGCCAAGAT CGAGGAGATC
CGGTCTTTCC TCACTCAGGT GTACAACGTG AGTGGCCGCC AGGAGGACAT CGCCAGTCTG
AGCGACGCCG AGGTGCTGGA GCTCGCCGGT AATCTGCAGG ACGGCGTGCC GATGGCGACT
CCCGTGTTCG ATGGAGCCAC CGAGGAAGAC ATCAAGGCCA TGCTGCGGCT GGCCGATCTT
CCCGAAAGCG GCCAGGCAAC TTTGTTCGAC GGACGTACCG GCGACGTGTT CGACCGTCCG
GTGACCGTCG GTTACATGTA CATGCTCAAA CTCAATCATC TGGTCGACGA CAAGATGCAC
GCACGGTCCA CCGGTCCGTA CAGTCTGGTG ACCCAGCAGC CGCTGGGCGG CAAGGCGCAA
TTCGGTGGAC AGCGTTTCGG CGAAATGGAG GTGTGGGCGT TGGAGGCCTA CGGTGCCGCC
TATACTCTGC AGGAGATGCT GACGGTGAAA TCTGACGACG TGAACGGCAG GACCAAGATG
TACAAGAACA TCGTCGACGG TGATCACCGT ATGGAAGCCG CCATGCCCGA GTCGTTCAAC
GTCCTGATCA AAGAGATCCG CTCGCTCGGA ATCAACATCG AGCTCGAGCA GGACTGA
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| Protein sequence | MAYSFTEKKR IRKSFGKRQD VLEVPYLLAT QVDSYRRFLQ LDKQPAARSD EGLHAALKSV
FPIKSHSGNI VLEYVSYRLG DPVFDVKECQ QRGTTYAAPL RVLVRLVVYD KDAPVGAKVV
RDIKEQEIYM GEIPLMTDNG TFVINGTERV IVSQLHRSPG VFFDHDRGKT HSSGKLLFNA
RIIPYRGSWL DFEFDHKDCV YVRIDRRRKL PATVLLRALG YDNEQIIAEF FDTNRFLLSS
AGIQLELIPE RLRGDIASFD IRLGDQIVVE KDHRITARHI RMLQKENVNL LDVPKDYLYG
KILAHNVVDT STGELIAKVN QEITEDVYAR LVAAAIPEIR TLYVNDLDRG PYISNTMRID
LTETQLDALV EIYRMMRPGE PPTKEAAQTL FENLFFSAER YDLSAVGRMK FNRRLGRTDP
TGPGVLENDD IIAVLKELIN IRNGGGTVDD IDHLGNRRVR SVGEMVENQF RLGLVRVERA
VKERLSLPDA DGLMPQEIIN AKPVAASIKE FFGSSQLSQF MDQNNPLSEV THKRRVSALG
PGGLARERAG FEVRDVHTTH YGRVCPIETP EGPNIGLINS LAVYSRTNEY GFLETPYRKV
IDGRVTDQIE YLSAIEEGQY YIAQASASVD ENGMLKDELV SCRHKDEFTL ASRENINYMD
VSSKQIVSVA ASLIPFLEHD DANRALMGSN MQRQAVPTLR TEKPLVGTGM ERIVARDSGV
AVVAKRGGTV EFVDASRIVV RVNDEETEAG VPGVDIYNLT KYTRSNQNTC INQRPLVKPG
DVVARNDVLA DGPSTDMGEL ALGQNLLVAF MPWNGYNFED SILISERVVQ DDRFTTIHIE
EKTCVARDTK LGPEEITADI PNVGEAALSK LDESGIVYIG AEVKAGDILV GKVTPKGETQ
LTPEEKLLRA IFGEKASDVK DTSLRVPSGM DGTVIDVQVF TRDGVKKDER ARQIEEAEIE
RVRKDLNDQL RIIEKDFYQR AEQMVLGKVA DMGPGGLKRG ATITREYLDS IKPAQWLEIR
LQDEDVNLQI EAIAEQIAQQ REEIAKRLEE KRRKITMGDD LAPGVLKMVK VYLAVKRRIQ
PGDKMAGRHG NKGVISRIVP VEDMPYSADG TPVDIVLNPL GVPSRMNVGQ VLETHLGWAA
KGVGLKIGRM LEAKAKIEEI RSFLTQVYNV SGRQEDIASL SDAEVLELAG NLQDGVPMAT
PVFDGATEED IKAMLRLADL PESGQATLFD GRTGDVFDRP VTVGYMYMLK LNHLVDDKMH
ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAA YTLQEMLTVK SDDVNGRTKM
YKNIVDGDHR MEAAMPESFN VLIKEIRSLG INIELEQD
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