| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA1053 |
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| Symbol | |
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| ID | 3104049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylococcus capsulatus str. Bath |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002977 |
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| Strand | + |
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| Start bp | 1103820 |
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| End bp | 1105580 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637170237 |
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| Product | TPR domain-containing protein |
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| Protein accession | YP_113528 |
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| Protein GI | 53804652 |
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| COG category | [N] Cell motility
[R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.038306 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCTAAAA TTCGGATACG AAAGTTCTGG CCCAGTGGTG CAGGTACTGT GCCAGGTGTG
CTGTTGATTG CCCTGGCACT CGGGTGCGTG GGCCACAGGG CCAAATTTGC GGACGAAACG
TTCTCGAGCG ATGAGGCCGA GATCCGTTCC GCGGTCGAGC CGCTGCCGCC CAAAGCTCAG
CTCGTCTACC TGGTGCTGGC CGGGGAGTTG GCCGGCCAGC GCGGCCGCTA CGAGGTTGCG
CTCGAGCATT ATCTCCAGGC CGCGCGCCTG TCGCGGGACG GGCGCCTTGC GGAACGGGCG
ATGCAGATCG CCCTGTTTAT AAAAAAATAT CCCGAAGCGG TCGAAAGCGT GGCGCTCTGG
CTGAAGGCCG AACCCCGCCA CGCGGGGGCC CGCCGCATGG CGACCCTGCT CTACCTGAAA
GAAGGACGGC GTGACGAGGC GGTGACACAG ATGAAAGTGT TGCTGACGCT GCCGGACGCC
GATCTGGAAA ATACGCTGAT CGAGTTGGTG AAGGTGCTCG GCAACGAGGT GCCCAGACAG
GATGCAACGG AATTCATGGA CGCCCTGTTG CGGGCATTTC CTGCCATGGC GGATCTCCAT
TTCGCAGCCG CCCTTCTCGC CGCCAACCAG GGCGAGTTCC AGCAGGCTCT GAGCGAAACC
GAGGAGGCCC TGAAGCTGCA TCCGGACTGG GGCCGGGCCC GAGTACTGCA GGCACAGGTC
ATGGCGCAGA TGGGTGATTC GGCGACTGCC GGGGACCTGA TACAGCGCGC GCTCAAGCGC
GATCCGGACA ATGCCAGGCT GCGCCTGATC TACTCTCAGT TTCTCATCAA GTCCGGTGAC
ATCGAAGGGG CGCGGCGGGA GCTGGAGCGT ATCGTAGCCA AGGAGCCCGG CAATCAGGAC
GCCCGGTTCG GACTCGGATT GGCGCTCATC GATCTGGGCC GGCTCGATGC GGCCCGCCGC
GAGTTCGCGG CGCTGGCCGC GTCCGAAAAA TGGCGGGTTC AAGCCTACTT TTATCTGGGG
CTGATCGATG CCCGCAAGGG CAGATTGAAT GAGGCGCTGG ACTGGTTCGA CCGCGTCACG
ACCGGTCCGA CCGAGTTCGA TGCCCGGGTG AACGGCATTA CCGTCCTGAT CAGCCTGGGC
CGTTTGACAG AGGCGCGAAC CCGGCTCGCC GACATCCGCC GGCGTTTTCC GAACGAATCG
GTTCGCCTGT ATCTCCTGGA GGCCGAGCTG CTTTCCAAGA ACCGAGACTA CGAAGATGCC
TTCAATCTGT TGACCGATGC GCTCGGCGAG AATCCGGGGC AGAGCGATCT GCTCTATGCC
CGGGCTCTGG TGGCGGAGAA CCTCGGTCGC TTCGACGTCC TGGAAGCGGA TTTGCGCCAG
GTGCTGGAAA AGAGCCCCGA TGATCCCAAC GCGCTGAACG CCTTGGGTTA CACGCTCGTC
GAGCGGGGCG AACGGTTGGA CGAGGCCAAG GGCTATCTCG ATCGGGCGAT CCGGCTCAAG
CCCGATGACC CGGCGATACT CGACAGTTAC GGCTGGCTGC TGTACCGGCT GCGCAAGTAT
GCCGAAGCCA TCGAATACCT CCGCCGGGCC TATGACAAGG TTCAGGATCC AGAGATCGCA
TCGCATCTGG GTGAGGTTCT GATGGAGTCA GGCCGGCGTC AGGAAGCCCG GAAAATCCTG
CGCGAGGCAT GGAAGAAGGC GCCCGAGCAT GAGGACATGC AGCGGATCAG GGCGCGCTAT
CCGGAACTGC TGGCGCCGTG A
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| Protein sequence | MPKIRIRKFW PSGAGTVPGV LLIALALGCV GHRAKFADET FSSDEAEIRS AVEPLPPKAQ
LVYLVLAGEL AGQRGRYEVA LEHYLQAARL SRDGRLAERA MQIALFIKKY PEAVESVALW
LKAEPRHAGA RRMATLLYLK EGRRDEAVTQ MKVLLTLPDA DLENTLIELV KVLGNEVPRQ
DATEFMDALL RAFPAMADLH FAAALLAANQ GEFQQALSET EEALKLHPDW GRARVLQAQV
MAQMGDSATA GDLIQRALKR DPDNARLRLI YSQFLIKSGD IEGARRELER IVAKEPGNQD
ARFGLGLALI DLGRLDAARR EFAALAASEK WRVQAYFYLG LIDARKGRLN EALDWFDRVT
TGPTEFDARV NGITVLISLG RLTEARTRLA DIRRRFPNES VRLYLLEAEL LSKNRDYEDA
FNLLTDALGE NPGQSDLLYA RALVAENLGR FDVLEADLRQ VLEKSPDDPN ALNALGYTLV
ERGERLDEAK GYLDRAIRLK PDDPAILDSY GWLLYRLRKY AEAIEYLRRA YDKVQDPEIA
SHLGEVLMES GRRQEARKIL REAWKKAPEH EDMQRIRARY PELLAP
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