| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA0989 |
|---|
| Symbol | csdB |
|---|
| ID | 3103136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | - |
|---|
| Start bp | 1034777 |
|---|
| End bp | 1036021 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637170176 |
|---|
| Product | selenocysteine lyase |
|---|
| Protein accession | YP_113467 |
|---|
| Protein GI | 53804904 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCG CCCCCGCCGC CGTCCCGGCT TTCGACGTAG CCCGGATCAG GACGGACTTC
CCGATCCTCG GACAGCAGGT TCACGGCAAG CCGCTGGTCT ATCTGGACAA CGCCGCCACC
GCCCAGAAAC CCAAGGCGGT GCTGGACTGC ATCGCGCATG TGTACGGGGA GGACTACGCC
AACGTCCACC GCGGCGTACA CACCCTGAGC CAGCGCGCCA CGGAGTTGTT CGAGGGGGCA
CGGGAAAAGG TGCAGCGCCA CCTCAACGCC CGCCATTCGC ACGAGATCGT CTTCACCCGC
GGCACCACCG AGGCGATCAA CCTGGTCGCC CAGTCCTACG GACGGCCACG CTTCAAGGCG
GGGGACGAAA TCCTCATCAC GGCCATGGAG CATCATTCCA ACATCGTGCC CTGGCAGATG
CTGTGCGAGC AGACCGGCGC CGTGCTGAAG GTCGTCCCGA TCGACCGCAC CGGCACCCTG
GAACTGGACC GGTTCGAAGC CCTGCTGTCG AACCGTACCC GGCTGCTGGC GGTGGCGCAC
ATGTCGAACG CGCTGGGCAC GATCAACCCG GTGGAAACGC TGATCGAACA GGCCCATCGC
CGCGGCGTGC CGGTGCTGGT CGACGGCGCC CAGGCGATAC CGCACATGGC GGTGGACGTG
CAGGCGCTGG ACTGCGATTT CTACGCCTTC TCCGGCCATA AGCTGTATGG CCCCGCCGGC
ATCGGGATCC TGTACGGCAA GGAAGAGTTG CTGAACAAGA TGCCGCCCTA TCAGGGAGGC
GGCGACATGA TCCGCCGGGT GACCTTCGAG AAGACCGAAT ACAACACCCT GCCCTACAAG
TTCGAAGCCG GCACGCCGAG CATCGTCGAC GCCATCGCCC TGGGTGCCGC CATCGACTAT
GTGAACGGCA TAGGCATGGA AACCATAGCC GGACACGAAC AGCGGCTGCT GGCCTACGCC
ACCGAACAGG CGCTACGCAT CCCGGGCTTA GAGCTGTTCG GCCAGGCCGC CGAGAAGGGT
GCCATCCTGT CGTTCACCCT GCACCGCATC CACCCCCACG ACATCGGCAC GATCCTGGAT
CACCTCGGCA TCGCCATCCG CGCCGGGCAT CATTGCGCCA TGCCGGTGAT GGACTTTTTC
GGCATTCCCG CGACGGCGCG GGCGTCGTTC GGGCTTTACA ACACTTTCGA AGAGGTAGAC
GCGTTGATCG CAGGCATCCA CAAGGTCATC GAGGTATTCG GCTGA
|
|---|
| Protein sequence | MNTAPAAVPA FDVARIRTDF PILGQQVHGK PLVYLDNAAT AQKPKAVLDC IAHVYGEDYA
NVHRGVHTLS QRATELFEGA REKVQRHLNA RHSHEIVFTR GTTEAINLVA QSYGRPRFKA
GDEILITAME HHSNIVPWQM LCEQTGAVLK VVPIDRTGTL ELDRFEALLS NRTRLLAVAH
MSNALGTINP VETLIEQAHR RGVPVLVDGA QAIPHMAVDV QALDCDFYAF SGHKLYGPAG
IGILYGKEEL LNKMPPYQGG GDMIRRVTFE KTEYNTLPYK FEAGTPSIVD AIALGAAIDY
VNGIGMETIA GHEQRLLAYA TEQALRIPGL ELFGQAAEKG AILSFTLHRI HPHDIGTILD
HLGIAIRAGH HCAMPVMDFF GIPATARASF GLYNTFEEVD ALIAGIHKVI EVFG
|
|---|
| |