Gene MCA0817 details

Gene Information

• Locus tag: MCA0817
• Symbol: dxs
• ID: 3103193
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: -
• Start bp: 858569
• End bp: 860488
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637170022
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_113316
• Protein GI: 53804816
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.64849
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGAAA CCAAAAGATA TGCCCTTCTC GAAGCGGCAG ACCATCCCGC CGCACTGCGC 
AACCTGCCGG AAGACAGGCT GCCTGAGCTC GCCGAAGAAC TGCGGGGCTA TCTCCTGGAA 
AGCGTGAGCC GGTCGGGCGG GCACCTGGCC GCGGGACTCG GGACGGTGGA GCTGACCATC 
GCCCTGCATT ACGTCTTCAA CACCCCCGAA GACAAGCTGG TCTGGGACGT CGGCCATCAG 
GCCTATCCGC ACAAGATCCT GACCGGGCGG CGCGCCCGCC TGCCGACCAT CCGCAAGAAG 
GGGGGATTGT CGGCCTTCCC CAATCGGGCC GAGAGCCCTT ACGACTGCTT CGGCGTCGGC 
CATTCGAGCA CCTCGATCAG CGCGGCCCTC GGCATGGCCG TCGCAGCCGC GCTGGAACGG 
CGCCCCATCC ATGCGGTGGC GATCATCGGC GATGGCGGCC TCACGGGGGG CATGGCCTTC 
GAAGCACTCA ACCATGCCGG CACGCTGGAT GCGAACCTCC TGATCATCCT CAACGACAAC 
GAGATGTCGA TCTCACCCAA TGTCGGCGCG CTCAACAACT ACCTGGCGAA GATATTGAGC 
GGGAAGTTCT ACTCCTCGGT GCGTGAAAGC GGCAAGCATC TCCTGGGCCG CCACATGCCC 
GGCGTTTGGG AGCTGGCGCG GCGCGCCGAA GAACACGTCA AAGGCATGGT GGCGCCGGGA 
ACGCTGTTCG AAGAACTGGG CTTCAATTAT TTCGGCCCGA TCGACGGTCA TGATCTGGAC 
ACCTTGATCA CGACCTTGCG TAACCTGCGG GATCAGAAAG GCCCCCGCTT CCTGCACGTC 
GTCACCCGCA AAGGCAAGGG TTACGCACCC GCGGAGAAGG ATCCCGTGGC CTACCACGGC 
GTCGGCGCCT TCGACCTCGA CGCCGACGAA CTGCCCAAGT CCAAGCCGGG AACGCCGAGC 
TATACGGAAG TATTCGGCCA GTGGCTGTGC GACATGGCGG CGCGCGACCG GCGGCTGCTG 
GGCATCACGC CGGCGATGCG CGAAGGCTCC GGGCTGGTGG AATTCTCACA GCGCTTCCCG 
GATCGCTATT TCGACGTCGG CATCGCCGAG CAGCATGCCG TGACATTCGC CGCGGGACAG 
GCCAGCGAAG GTTACAAGCC GGTGGTGGCC ATCTACTCGA CCTTCCTCCA GCGCGCCTAT 
GACCAGTTGA TCCACGACGT CGCCCTGCAG AACCTGCCGG TGCTGTTCGC CATCGACCGC 
GCTGGTCTGG TCGGACCGGA CGGCCCGACC CATGCCGGCA GCTTCGATCT GAGCTTCATG 
CGCTGCATCC CCAACATGCT GATCATGGCG CCCTCGGATG AAAACGAATG CAGGCAGATG 
CTCTATACCG GCTTCATCCA TGACGGCCCG GCGGCCGTGC GTTATCCGCG CGGCAGAGGC 
CCCGGCGTCA GGCCGGAGGA GACGATGACT GCCTTCCCCG TCGGCAAAGG AGAGGTGCGC 
CTCCGCGGCA AGGGAACCGC CATCCTGGCC TTCGGCACCC CCCTGGCCGC CGCACTCGCG 
GTCGGCGAGC GGATCGGCGC CACGGTGGCC AACATGCGTT TCGTGAAACC CCTGGATGAG 
GCGCTTATCC TGGAGTTGGC AGCCACCCAC GACCGCATCG TGACCGTCGA GGAAAACGCC 
ATCGCCGGCG GTGCCGGCAG TGCGGTCGGC GAATTCCTCG CTGCCCAGCA CTGCGGCATT 
CCGGTCTGCC ACATCGGTCT GAAGGACGAA TTCCTCGACC AGGGCACCCG GGAGGAACTC 
CTGGCCATCG CCGGCCTCGA TCAGGCCGGC ATCGCCCGAT CGATCGACGC ATTCATCCAG 
GCCACGGCTG CCGCAGACAA ACCACGGCGG GCCCGCGGCC AGGCCAAGGA CAAACACTGA 

 

Protein sequence

MTETKRYALL EAADHPAALR NLPEDRLPEL AEELRGYLLE SVSRSGGHLA AGLGTVELTI 
ALHYVFNTPE DKLVWDVGHQ AYPHKILTGR RARLPTIRKK GGLSAFPNRA ESPYDCFGVG 
HSSTSISAAL GMAVAAALER RPIHAVAIIG DGGLTGGMAF EALNHAGTLD ANLLIILNDN 
EMSISPNVGA LNNYLAKILS GKFYSSVRES GKHLLGRHMP GVWELARRAE EHVKGMVAPG 
TLFEELGFNY FGPIDGHDLD TLITTLRNLR DQKGPRFLHV VTRKGKGYAP AEKDPVAYHG 
VGAFDLDADE LPKSKPGTPS YTEVFGQWLC DMAARDRRLL GITPAMREGS GLVEFSQRFP 
DRYFDVGIAE QHAVTFAAGQ ASEGYKPVVA IYSTFLQRAY DQLIHDVALQ NLPVLFAIDR 
AGLVGPDGPT HAGSFDLSFM RCIPNMLIMA PSDENECRQM LYTGFIHDGP AAVRYPRGRG 
PGVRPEETMT AFPVGKGEVR LRGKGTAILA FGTPLAAALA VGERIGATVA NMRFVKPLDE 
ALILELAATH DRIVTVEENA IAGGAGSAVG EFLAAQHCGI PVCHIGLKDE FLDQGTREEL 
LAIAGLDQAG IARSIDAFIQ ATAAADKPRR ARGQAKDKH