Gene MCA0812 details

Gene Information

• Locus tag: MCA0812
• Symbol: sqhC
• ID: 3102260
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: -
• Start bp: 853390
• End bp: 855354
• Gene Length: 1965 bp
• Protein Length: 654 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637170018
• Product: squalene-hopene cyclase
• Protein accession: YP_113312
• Protein GI: 53804820
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1657] Squalene cyclase
• TIGRFAM ID: [TIGR01507] squalene-hopene cyclase; [TIGR01787] squalene/oxidosqualene cyclases

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.158231
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTGAGAG AAGCGACAGC AATATCCAAC CTCGAACCGC CGCTGACCGC CTCATACGTC 
GAGTCCCCTC TCGATGCGGC GATCCGGCAG GCCAAGGACC GTCTGCTGAG CCTGCAGCAC 
CTGGAAGGCT ATTGGGTGTT CGAACTCGAA GCCGACTGCA CCATCCCGGC CGAGTACATC 
CTGATGATGC ATTTCATGGA TGAAATCGAC GCGGCACTGC AGGCCAAGAT CGCCAACTAT 
CTGCGCAGCC ACCAGAGCGC CGACGGCAGC TATCCGCTGT TCCGGGGCGG CGCCGGCGAC 
ATCAGCTGCA CCGTCAAGGT CTATTACGCC CTCAAGCTGG CGGGCGATTC CATCGACGCC 
CCCCACATGA AGAAAGCCCG TGAGTGGATT CTTGCCCAGG GCGGCGCCGC CCGCTCCAAC 
GTCTTCACGC GCATCATGCT CGCCATGTTT GAACAGATTC CGTGGCGCGG AATCCCTTTC 
ATCCCGGTGG AAATCATGCT GCTGCCGAAG TGGTTTCCCT TCCATCTGGA CAAGGTGTCG 
TACTGGTCGC GCACGGTGAT GGTGCCGCTG TTCATTCTGT GCAGTCATAA AGTGACCGCG 
CGCAATCCAT CCCGGATCCA TGTCCGCGAA CTGTTCACGG TCGATCCGCA GAAGGAGCGC 
CATTATTTCG ACCACGTCAA GACGCCGCTC GGCAAGGCCA TCCTCGCGCT GGAGCGGTTC 
GGACGGATGC TGGAACCCCT CATTCCCAAA GCCGTACGCA AGAAGGCCAC CCAGAAAGCC 
TTCGACTGGT TCACGGCCCG GCTCAATGGC GTGGATGGGC TCGGCGCGAT ATTTCCGGCC 
ATGGTCAATG CCTATGAGGC GCTGGATTTC CTCGGCGTCC CTCCAGACGA CGAGCGCCGC 
CGACTCGCTC GCGAATCCAT CGACCGGCTG CTGGTGTTCC AAGGCGACAG CGTCTACTGC 
CAGCCCTGCG TCTCGCCGAT CTGGGACACC GCCCTCACGT CCCTCACCTT GCAGGAAGTG 
GCACGTCATA CCGCGGACCT CCGGCTCGAC GCGGCTCTCA GCAAGGGCCT CAAGTGGCTG 
GCCTCGAAGC AGATCGACAA GGACGCGCCC GGTGACTGGC GGGTCAACCG GGCCGGTCTG 
GAAGGCGGTG GCTGGGCGTT CCAGTTCGGC AACGACTATT ATCCCGACGT GGACGACAGC 
GCTGTCGTGG CCCACGCGCT GTTGGGCTCG GAAGATCCCA GCTTCGACGA CAACCTGCGG 
CGGGCGGCCA ACTGGATCGC CGGCATGCAG TCCCGCAACG GCGGCTTCGG CGCCTTCGAC 
GCCGACAACA CGTACTATTA CCTCAATTCC ATCCCCTTCG CCGACCACGG CGCCCTGCTC 
GACCCGCCGA CGGCAGACGT GAGCGCCCGC TGCGCCATGT TCCTCGCCAG ATGGGTGAAC 
CGGCAACCGG AGCTGCGTCC CGTCCTGGAG CGCACGATCG ATTACCTGCG CCGGGAACAG 
GAAGCCGACG GCTCCTGGTT CGGCCGCTGG GGCACCAACT ACATCTACGG CACCTGGTCG 
GTGCTGCTGG CCTACGAGGC CGCCGGTGTT CCGAACGACG ACCCCAGCGT GCGGCGCGCC 
GTGGCGTGGC TCAAGAGCAT CCAGCGCGAG GATGGCGGCT GGGGGGAAGA CAACTTCAGC 
TATCACGATC CGTCGTATCG CGGCCGCTTC CACACCAGCA CTGCATTCCA AACCGGATTC 
GCCCTGATCG CGCTGATGGC GGCGGGCGAA GCCGGCTCAC CGGAAGTCCA GGCCGGCGTC 
GATTACCTGC TCCGCCAGCA GCGGCCCGAC GGATTCTGGA ACGATGAATG CTTCACCGCA 
CCGGGTTTCC CCCGTGTGTT CTATCTGAAA TATCACGGCT ACGACAAATT CTTCCCCCTG 
TGGGCGCTGG CTCGTTACCG TAACGAACGC TACGCCCTGG CGTGA 

 

Protein sequence

MLREATAISN LEPPLTASYV ESPLDAAIRQ AKDRLLSLQH LEGYWVFELE ADCTIPAEYI 
LMMHFMDEID AALQAKIANY LRSHQSADGS YPLFRGGAGD ISCTVKVYYA LKLAGDSIDA 
PHMKKAREWI LAQGGAARSN VFTRIMLAMF EQIPWRGIPF IPVEIMLLPK WFPFHLDKVS 
YWSRTVMVPL FILCSHKVTA RNPSRIHVRE LFTVDPQKER HYFDHVKTPL GKAILALERF 
GRMLEPLIPK AVRKKATQKA FDWFTARLNG VDGLGAIFPA MVNAYEALDF LGVPPDDERR 
RLARESIDRL LVFQGDSVYC QPCVSPIWDT ALTSLTLQEV ARHTADLRLD AALSKGLKWL 
ASKQIDKDAP GDWRVNRAGL EGGGWAFQFG NDYYPDVDDS AVVAHALLGS EDPSFDDNLR 
RAANWIAGMQ SRNGGFGAFD ADNTYYYLNS IPFADHGALL DPPTADVSAR CAMFLARWVN 
RQPELRPVLE RTIDYLRREQ EADGSWFGRW GTNYIYGTWS VLLAYEAAGV PNDDPSVRRA 
VAWLKSIQRE DGGWGEDNFS YHDPSYRGRF HTSTAFQTGF ALIALMAAGE AGSPEVQAGV 
DYLLRQQRPD GFWNDECFTA PGFPRVFYLK YHGYDKFFPL WALARYRNER YALA