Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCA0683 |
Symbol | secD |
ID | 3104789 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylococcus capsulatus str. Bath |
Kingdom | Bacteria |
Replicon accession | NC_002977 |
Strand | + |
Start bp | 713696 |
End bp | 715546 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637169893 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_113194 |
Protein GI | 161579535 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.760335 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAAACC GTTTTCCCTT ATGGAAAAAC CTGATGGTCG CAGCCGTGTT GATCCTCGGG ATCATTTACG CGCTGCCCAA TTTCTTCGGT GAAGACCCAT CCGTTCAATT GTCGGCGGTT CGTGCGGCGA AGGTCGATGA CAGCCTCAAG GTCCAGGTGC AGGGGCTGCT GGATGCGGCC GGTCTCAAGG CGAAGGCCGT GGAGATGGCT GACAAGCGCA TGCTGATCCG GTTCGGTGAT ACCGATTCGC AGCTCAAGGC GTCCGACGTT CTGAACGAGA AGCTGGGGGA TGCCTACACG GTGGCCTTGA ATCTGGCGCC GTCGACGCCT TCCTGGCTGC GCGCGTTCGG TGCCAAGCCC ATGTATCTGG GACTGGACTT GCGGGGCGGT GTGCATTTCC TGCTTCAGGT CGACATGGAT GCTGCCATCA AGCAGGCGGA AGACCGTTAC GCGGAAGACG CCCGCAGCCT GCTGCGCGAA AACAAGATTC GTTACCAGTC GGTGGAAAAA CAGAACGGCG TGATCCAGGT CCGGCTGCCG GATCCCAATG CCCTGTCGCA GGCGCAGGTG CTGCTGAAGC GCGAACTGCG CGGGTTACAG ATCGACGTCA AGGAAGGCGA AAACCTGCTC GAAGGACGCT TGTCCGAAGT CGAGCGGCGC GAGATCAAGC GCTTCGCCGT AGCCCAGAAC ACGACGACGC TGCGCAACCG TGTCAACGAG CTCGGTGTGG CCGAACCCGT GATCCAGCAG CAGGGCGAGG ATCGCATCGT CGTCCAGTTG CCCGGCGTCC AGGATACCGC GCGGGCCAAG GAAATCCTCG GCGCCACCGC GACTCTGGAG TTCCGGCTCG TCGACAACGA ACACCCGGTG CCGGCCGAGG GGGAGAAAGC GCCGTTGGGC TCGCATCTCT ACCGCGACCG TCAGAACCGT CCGGTTCTGT TGGAGCGCAA GATCATCGTC ACCGGCGACC AGGTCGTCGA CGCGGCTTCC GGCATCGACC AGCAGAGTGG CCAGCCGGCG GTCTACGTCA CGCTCAACAG CGTGGGCGCC AAGAAGATGG GCGACACCAC CCGCGAAAAC GTCGGCCGCG CCATGGCGGT GGTCTACATC GAGAACAAGT CCGAGACCAA GGAGGTCGAC GGCCAGAAGG TGACGACCAA GAAAAAGGTC GAGGAGGTCA TCAACATCGC CACCATCCGC GACCGTTTCA GCAAACGTTT CCAGATCACC GGCCTGGACA GCACCGAGGA GGCGCGGAAC CTGGCTCTCC TGCTGCGGGC GGGGGCTCTG GCGGCACCGG TGGACATCGT CGAGGAGCGC ACCGTGGGCC CCAGCATGGG CAAGGAAAAC ATCGACCGCG GCGTCAAGTC CAACGGCTAC GGCTTCATCG CCATCGCGGT GTTCATGATC CTCTATTACC GGATGTTCGG CCTGTTCTCC ATCCTGGCGC TGGCGGCGAA TGTCCTCCTG CTGGTTGCCG TGCTGTCGCT GCTGCAAGCG ACCCTGACGC TGCCGGGTTT GGCGGGTATC GCTCTGACCG TGGGTATGGC CATCGACGCC AACGTGCTCA TCAACGAACG CATCCGCGAG GAACTGCGGG CGGGCAGTAC GCCCCATGCC GCCATCCATG CAGGCTATGA GCGCGCATTC GCCACGATTC TGGACTCCAA CGTCACGACC TTCGTCGCCG GCGTGGCCCT GTTCCTGCTT GGGGCAGGCC CCGTACGGGG CTTCGCGCTG GTGTTGTGCA TCGGCATCCT GACCTCCATG TTCAGCGCCG TCCTGGTGTC CAGGGCGCTG GTCAACTTCA CCTATGGCCG GCAGCGCAAG CTGGTCAAGA TCGCAGTCTG A
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Protein sequence | MRNRFPLWKN LMVAAVLILG IIYALPNFFG EDPSVQLSAV RAAKVDDSLK VQVQGLLDAA GLKAKAVEMA DKRMLIRFGD TDSQLKASDV LNEKLGDAYT VALNLAPSTP SWLRAFGAKP MYLGLDLRGG VHFLLQVDMD AAIKQAEDRY AEDARSLLRE NKIRYQSVEK QNGVIQVRLP DPNALSQAQV LLKRELRGLQ IDVKEGENLL EGRLSEVERR EIKRFAVAQN TTTLRNRVNE LGVAEPVIQQ QGEDRIVVQL PGVQDTARAK EILGATATLE FRLVDNEHPV PAEGEKAPLG SHLYRDRQNR PVLLERKIIV TGDQVVDAAS GIDQQSGQPA VYVTLNSVGA KKMGDTTREN VGRAMAVVYI ENKSETKEVD GQKVTTKKKV EEVINIATIR DRFSKRFQIT GLDSTEEARN LALLLRAGAL AAPVDIVEER TVGPSMGKEN IDRGVKSNGY GFIAIAVFMI LYYRMFGLFS ILALAANVLL LVAVLSLLQA TLTLPGLAGI ALTVGMAIDA NVLINERIRE ELRAGSTPHA AIHAGYERAF ATILDSNVTT FVAGVALFLL GAGPVRGFAL VLCIGILTSM FSAVLVSRAL VNFTYGRQRK LVKIAV
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