Gene MCA0683 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMCA0683 
SymbolsecD 
ID3104789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylococcus capsulatus str. Bath 
KingdomBacteria 
Replicon accessionNC_002977 
Strand
Start bp713696 
End bp715546 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content63% 
IMG OID637169893 
Productpreprotein translocase subunit SecD 
Protein accessionYP_113194 
Protein GI161579535 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.760335 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAAACC GTTTTCCCTT ATGGAAAAAC CTGATGGTCG CAGCCGTGTT GATCCTCGGG 
ATCATTTACG CGCTGCCCAA TTTCTTCGGT GAAGACCCAT CCGTTCAATT GTCGGCGGTT
CGTGCGGCGA AGGTCGATGA CAGCCTCAAG GTCCAGGTGC AGGGGCTGCT GGATGCGGCC
GGTCTCAAGG CGAAGGCCGT GGAGATGGCT GACAAGCGCA TGCTGATCCG GTTCGGTGAT
ACCGATTCGC AGCTCAAGGC GTCCGACGTT CTGAACGAGA AGCTGGGGGA TGCCTACACG
GTGGCCTTGA ATCTGGCGCC GTCGACGCCT TCCTGGCTGC GCGCGTTCGG TGCCAAGCCC
ATGTATCTGG GACTGGACTT GCGGGGCGGT GTGCATTTCC TGCTTCAGGT CGACATGGAT
GCTGCCATCA AGCAGGCGGA AGACCGTTAC GCGGAAGACG CCCGCAGCCT GCTGCGCGAA
AACAAGATTC GTTACCAGTC GGTGGAAAAA CAGAACGGCG TGATCCAGGT CCGGCTGCCG
GATCCCAATG CCCTGTCGCA GGCGCAGGTG CTGCTGAAGC GCGAACTGCG CGGGTTACAG
ATCGACGTCA AGGAAGGCGA AAACCTGCTC GAAGGACGCT TGTCCGAAGT CGAGCGGCGC
GAGATCAAGC GCTTCGCCGT AGCCCAGAAC ACGACGACGC TGCGCAACCG TGTCAACGAG
CTCGGTGTGG CCGAACCCGT GATCCAGCAG CAGGGCGAGG ATCGCATCGT CGTCCAGTTG
CCCGGCGTCC AGGATACCGC GCGGGCCAAG GAAATCCTCG GCGCCACCGC GACTCTGGAG
TTCCGGCTCG TCGACAACGA ACACCCGGTG CCGGCCGAGG GGGAGAAAGC GCCGTTGGGC
TCGCATCTCT ACCGCGACCG TCAGAACCGT CCGGTTCTGT TGGAGCGCAA GATCATCGTC
ACCGGCGACC AGGTCGTCGA CGCGGCTTCC GGCATCGACC AGCAGAGTGG CCAGCCGGCG
GTCTACGTCA CGCTCAACAG CGTGGGCGCC AAGAAGATGG GCGACACCAC CCGCGAAAAC
GTCGGCCGCG CCATGGCGGT GGTCTACATC GAGAACAAGT CCGAGACCAA GGAGGTCGAC
GGCCAGAAGG TGACGACCAA GAAAAAGGTC GAGGAGGTCA TCAACATCGC CACCATCCGC
GACCGTTTCA GCAAACGTTT CCAGATCACC GGCCTGGACA GCACCGAGGA GGCGCGGAAC
CTGGCTCTCC TGCTGCGGGC GGGGGCTCTG GCGGCACCGG TGGACATCGT CGAGGAGCGC
ACCGTGGGCC CCAGCATGGG CAAGGAAAAC ATCGACCGCG GCGTCAAGTC CAACGGCTAC
GGCTTCATCG CCATCGCGGT GTTCATGATC CTCTATTACC GGATGTTCGG CCTGTTCTCC
ATCCTGGCGC TGGCGGCGAA TGTCCTCCTG CTGGTTGCCG TGCTGTCGCT GCTGCAAGCG
ACCCTGACGC TGCCGGGTTT GGCGGGTATC GCTCTGACCG TGGGTATGGC CATCGACGCC
AACGTGCTCA TCAACGAACG CATCCGCGAG GAACTGCGGG CGGGCAGTAC GCCCCATGCC
GCCATCCATG CAGGCTATGA GCGCGCATTC GCCACGATTC TGGACTCCAA CGTCACGACC
TTCGTCGCCG GCGTGGCCCT GTTCCTGCTT GGGGCAGGCC CCGTACGGGG CTTCGCGCTG
GTGTTGTGCA TCGGCATCCT GACCTCCATG TTCAGCGCCG TCCTGGTGTC CAGGGCGCTG
GTCAACTTCA CCTATGGCCG GCAGCGCAAG CTGGTCAAGA TCGCAGTCTG A
 
Protein sequence
MRNRFPLWKN LMVAAVLILG IIYALPNFFG EDPSVQLSAV RAAKVDDSLK VQVQGLLDAA 
GLKAKAVEMA DKRMLIRFGD TDSQLKASDV LNEKLGDAYT VALNLAPSTP SWLRAFGAKP
MYLGLDLRGG VHFLLQVDMD AAIKQAEDRY AEDARSLLRE NKIRYQSVEK QNGVIQVRLP
DPNALSQAQV LLKRELRGLQ IDVKEGENLL EGRLSEVERR EIKRFAVAQN TTTLRNRVNE
LGVAEPVIQQ QGEDRIVVQL PGVQDTARAK EILGATATLE FRLVDNEHPV PAEGEKAPLG
SHLYRDRQNR PVLLERKIIV TGDQVVDAAS GIDQQSGQPA VYVTLNSVGA KKMGDTTREN
VGRAMAVVYI ENKSETKEVD GQKVTTKKKV EEVINIATIR DRFSKRFQIT GLDSTEEARN
LALLLRAGAL AAPVDIVEER TVGPSMGKEN IDRGVKSNGY GFIAIAVFMI LYYRMFGLFS
ILALAANVLL LVAVLSLLQA TLTLPGLAGI ALTVGMAIDA NVLINERIRE ELRAGSTPHA
AIHAGYERAF ATILDSNVTT FVAGVALFLL GAGPVRGFAL VLCIGILTSM FSAVLVSRAL
VNFTYGRQRK LVKIAV