| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA0610 |
|---|
| Symbol | mdh |
|---|
| ID | 3103776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | - |
|---|
| Start bp | 645424 |
|---|
| End bp | 646401 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637169823 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_113126 |
|---|
| Protein GI | 53805062 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0039] Malate/lactate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01759] malate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.18375 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGC CGGTGCACGT CGCGGTCACG GGAGCCGCGG GACAGATCGC CTATTCCCTG
CTGTTCCGGA TCGCCGTGGG CGATCTGTTC GGGCCGCATC AGCCGGTCAT CCTGAAACTG
CTCGACGTTC CCTCGGCCGA GCGTGTCCTG GAGGGCGTGG CCATGGAGCT GGACGACTGC
GCCTCGCCGC TCCTTCAAGA AATCGAGGTG TCCAGTGATC CCGCCGAGGT TTTCGACGGC
GCCGAGGCCG TCTTCATGCT CGGCGCCACA CCGCGCGGCC CCGGCATGGA AAGACGGGAC
CTGCTGCAGG TGAATGCGGA CATCTTTTCG GCCCAGGGGC GCGCGCTGAA CGAATCGGCC
AGCCGCCGGG TGAAGATTCT GGTCGTGGGC AACCCGGCCA ATACCAATGC CCTGATCGCG
CAGCGCAACG CGCCGGACCT CGCCCCGGGA TGCTTCTCCG CCATGACCCG GCTCGACCAC
AACCGGGCCA CCAGCCTGCT GGCCAGACAT TGCGGCTGCA ACGTCGCGGA AATCTCCCGG
GTCGTCATCT GGGGAAATCA CTCGCCCACC CAATACCCCG ATCTCCATCA CGCCCGGGTC
AAGGGCAAAC CGGCGCTGTC CCTGGTGGAT CCAGCCTGGT ACGTGGAAAC ATTCATCCCC
ACGGTGCAGC AGCGGGGGGC ATCGGTCATA GCGATCCGGG GCAAATCCAG TGCTGCGTCG
GCAGCCAACG CGGCGCTGGA CCACATGCGG AGCTGGTTTC TGGGAACGCC GAAAGACGAC
TGGGTCAGCA TGACCGTCAG CAGCGACGGC AGCTACGGAA TCGCCGAAGG ACTGATGTTC
TCTTTCCCGG TCACCATCGA AAACGGCCGT TTCCGGATCG TGCAGGACCT GCCGCTCGAT
ACCTTCAGCC GCGAACGGCT GCGGCTCACC GAGGTGGAAC TTCTGGAGGA GCGCGCCATG
GTGAGCCACC TCCTCTGA
|
|---|
| Protein sequence | MKTPVHVAVT GAAGQIAYSL LFRIAVGDLF GPHQPVILKL LDVPSAERVL EGVAMELDDC
ASPLLQEIEV SSDPAEVFDG AEAVFMLGAT PRGPGMERRD LLQVNADIFS AQGRALNESA
SRRVKILVVG NPANTNALIA QRNAPDLAPG CFSAMTRLDH NRATSLLARH CGCNVAEISR
VVIWGNHSPT QYPDLHHARV KGKPALSLVD PAWYVETFIP TVQQRGASVI AIRGKSSAAS
AANAALDHMR SWFLGTPKDD WVSMTVSSDG SYGIAEGLMF SFPVTIENGR FRIVQDLPLD
TFSRERLRLT EVELLEERAM VSHLL
|
|---|
| |