| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA0461 |
|---|
| Symbol | |
|---|
| ID | 3104959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | + |
|---|
| Start bp | 477279 |
|---|
| End bp | 479063 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637169680 |
|---|
| Product | CBS/GGDEF/EAL domain-containing protein |
|---|
| Protein accession | YP_112991 |
|---|
| Protein GI | 53802317 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGACG TCCGCACCAA CGAGGCAGAA AAACGTCACG CCCATCCCGA TTTCGATGCC
GCCCGTTTCC CCGCCGATGC GCGAGTGCGG GTGCTCGCCC GGCGCTTCCC GCCCTATCAT
CGCGATTCCC CTTGCCTTGC CATTCTCGAC CGATTCTTGC ACGATCCCAC GCTGTCCGCC
GCCGCCGTGG TCGACGACGC GATGCGGCCG GTGGGCCTGA TCGACCGCTA TTCCCTGGTG
GAGCAATTTC TCCACCCGTA CAGCCGGGAC CTCTACCACA AGCACTCCAT CGCCGCGTTC
ATGGATCCTG AGCCGGTCAT CGTCGAGGCC GATTCCAGCA TCGACGATCT CTCCCGGATC
ATCATCGACG CTGGTATGCG GCACATGGTC AGCGGCTTCA TCGTCACCGA GGACGGTCTG
TACCTGGGTA TCGGCAGCGG GCACGACCTG TTCGAGGAGG TCGCCAACCG CAAGCAGAAC
CATCTTTATC ATCTGGCGCA TTATGACCCG CTCACCAGCC TGCCCAACCG CCTGCTGCTG
AACGACCGGC TCAAGCGCGC CTGTCTGCGG GGCCAGCGCG GGGGCTACCG GATCGCGCTG
CTGTTCATCG ACCTCGACCG TTTCAAACTG GTCAACGACA CGCTGGGGCA TGCGGCGGGC
GACCAGTTGC TGCAAGGGGT GGCCGGCCGT TTCGCCGCCT GCGTGCGCAA GGTGGACACC
GTGGCGCGCC TCGGCGGAGA CGAATTCACG GTGCTGCTGG AGCCGGTGCA GGGACCGGAC
GAAGCGCTCG CGGTGGCGGC CAAGCTGGCG CAGAGTCTGG AACGGCCCTT CCTGATCCAG
AATCACGAGA TCACGACTTC AGCCAGCATC GGCGTCGTCC TGTTCCCCGA ACACGACGCG
ACGGTCGAAG GCCTGATGCG TAAGGCCGAT GCTGCCATGT ATTGCGCCAA ACGCGAAGGG
CGCAACCGTT TTGCGCTGTT CACCGAGGAA ATGAACTCGA CGGTGGTCGA GCGCGTGACG
CTCGAGTCCT ATCTGAATGC GGCGCTGGAA AAGGGCGAGT TCTGCTGCCA TTTCCAGCCT
CAGATGGCGA CGGCGGACGA CCGCATCGTG GGGGTCGAAG CGTTGCTGCG CTGGACCAAT
CCCGTGCTAG GGAGGGTTCC TCCGCTGAAA TTCATCCCGG TGGCGGAGGA CACCGGTCTG
ATTCTGCCCC TCGGCCTGTG GGCACTGGAG ACGGCCTGCG CGCAGCAGGT CCGCTGGCTT
TCCCAAGGGT TGCCGCCCTT GCGCATGGCC GTCAACATCT CGCCCCTGCA GTTCAGGAAC
CGGGAATTCT GCGACCAGGT CCGGGCCATC GTGCAAAGGA CCGGCATCCG CGCGGAGCAT
CTGGAACTGG AGCTGACCGA GAGCGCGGTC ATGGCGGACG CGGAAAGCTC GGTCGGCATC
CTCCGGGAGT TGCGCGATTC CGGCATTCGT CTCGCCATCG ACGATTTCGG CACCGGCTAT
TCGAGCCTGA GCTATCTCAG GAAATTTCCG CTGGATCGCC TCAAGATCGA CCGCTCCTTC
GTCAGCGGGA TCGACCGGAT CCCGGCCAAC GAGCTCATCG TCAAGGCGAT CGTCGCGCTG
GGCGGGAGTC TGGGCCTGGA CGTCATCGCC GAAGGCGTGG AGACGCCGGA GGAACTGGAA
TGCATCGAGC GCTGCGGCTG CAGCGAATAC CAGGGCTTCC GGCTGTCGGA GCCGCTCACC
GCGGAGGATT TCGCGCACTG GTTCGAAGAT TCCGGATACG TCTGA
|
|---|
| Protein sequence | MSDVRTNEAE KRHAHPDFDA ARFPADARVR VLARRFPPYH RDSPCLAILD RFLHDPTLSA
AAVVDDAMRP VGLIDRYSLV EQFLHPYSRD LYHKHSIAAF MDPEPVIVEA DSSIDDLSRI
IIDAGMRHMV SGFIVTEDGL YLGIGSGHDL FEEVANRKQN HLYHLAHYDP LTSLPNRLLL
NDRLKRACLR GQRGGYRIAL LFIDLDRFKL VNDTLGHAAG DQLLQGVAGR FAACVRKVDT
VARLGGDEFT VLLEPVQGPD EALAVAAKLA QSLERPFLIQ NHEITTSASI GVVLFPEHDA
TVEGLMRKAD AAMYCAKREG RNRFALFTEE MNSTVVERVT LESYLNAALE KGEFCCHFQP
QMATADDRIV GVEALLRWTN PVLGRVPPLK FIPVAEDTGL ILPLGLWALE TACAQQVRWL
SQGLPPLRMA VNISPLQFRN REFCDQVRAI VQRTGIRAEH LELELTESAV MADAESSVGI
LRELRDSGIR LAIDDFGTGY SSLSYLRKFP LDRLKIDRSF VSGIDRIPAN ELIVKAIVAL
GGSLGLDVIA EGVETPEELE CIERCGCSEY QGFRLSEPLT AEDFAHWFED SGYV
|
|---|
| |