Gene MCA0418 details

Gene Information

• Locus tag: MCA0418
• Symbol: ccmF
• ID: 3102767
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: -
• Start bp: 417110
• End bp: 419083
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637169638
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: YP_112949
• Protein GI: 53802370
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCGCCG AACTCGGCCA CATCGCCCTG ATCATGGCCC TCCTGATGGC CCTCCTGCAG 
GGCGCCTTCC CGCTGATGGG CGCCTCCCAG GGCGTGGACA TCTGGATGAG CGTCGCCAAG 
CCGGCCGGCC GCGCGCAGTT CCTGTTTCTG CTGGTATCCT TCGGCGCCCT CACCGCCTGC 
TTCGTCAACA ACGATTTTTC GGTGGAATAC GTCGCCCGCA ACTCGAACTC GGCCCTGCCG 
CTCTACTATC GCATCGCCGC GGTATGGGGC TCACATGAGG GGTCGATGCT GCTGTGGGCC 
ACGATCCTGG GTCTCTGGAC AGCGGCGGTG ACGGTGTTCA GCCGCAGCCT GTCGGAAGAC 
TTTCTGGCCC GGGTGCTGGG CATCATGGGG CTGGTGAGCG TCGGCATCCT GCTGTTCATC 
CTGTTCACCT CGAACCCGTT CGAGCGGCTG ACACCGGTGC CGCCCGACGG CAACGACCTG 
AATCCGCTGC TGCAGGATTT CGGCATGACG GTGCATCCGC CCATGCTGTA CATGGGCTAT 
GTGGGACTGA GCGTAGCCTT CGCCTTCGCC ATCGCCGCCC TGCTGGGCGG CTCGCTGGAC 
TCGGCATGGG CGCGCTGGTC ACGGCCCTGG ACCCTGGTGG CCTGGCTGTT CCTGACCGGC 
GGCATCACCC TCGGCTCATG GTGGGCCTAT TACGAACTGG GCTGGGGCGG CTGGTGGTTC 
TGGGACCCGG TGGAAAACGC CTCCTTCATG CCCTGGCTGG TCGCCACCGC ACTTATCCAC 
TCGCTGGCCG TCACCGAGAA GCGCGGCGCC TTCAAGGCCT GGACCGTGCT GCTGGCGATC 
TTCGCCTTTT CGCTGAGCCT GCTGGGCACC TTCCTGGTAC GTTCCGGCGT GCTGACCTCC 
GTGCATGCCT TCGCTTCCGA CCCCACCCGC GGCCTGTTCA TCCTGATCCT GCTGGCCATC 
GTGGTGGGCG GTTCGCTGCT GGTTTACACC GTGAAGGCGC CGGCCGTGCG CGATGTGGCG 
CGCTATAGCC TGGTGTCCAA GGAAAACCTG CTGCTGCTCA ACAACATCCT GCTGGTGACC 
GCCTCCGGCA GTATCCTGCT CGGCACCCTT TATCCGCTGA TCCTGGACGC GCTGAAGCTG 
GGCAAGATTT CGGTCGGCCC GCCGTATTTC GGCACGGTGT TCGCTCCGCT GATGGCGCCG 
ATCTTCCTGC TCGCCGGTAT CGGGCCGATG TTCGCCTGGC GGGAGAGCCC GATCGGCCGC 
ATCCTGCACC GGGTCCGCTA TCTGTTCCCG GCGAGCTTCG CGGCCGGCAT CGCGCTCGCC 
GCCCTGGCCT GGGACGAGAC CGACTTCAAG ATGATGGCCG GGCTGGGCTG CGCGTTCTGG 
CTGGCGGCGA GCGCCTGCCT CAGCCTGTGG AGCCGGATCC GGCTGCGCGA CGGCTGGCTC 
GAAGGACTGC GCGCCCAGTC GCCCAGCGTC TACGGGATGA CCGCCGCGCA TCTCGGCGTC 
GCGGTGTTCC TGGTGGGCGC CGTGCTGTCC GACCGCCTGA GTCAGGAAAA GCTGGTACGC 
ATGGCGCCTG GCGACAGCGT GATGCTGGCC GGCTACGCCT TCCACTTCCT CGGCACGGAG 
ACCGTGCAGG GGCCGAACTT CTCGGCCCAG CAGGCCACCT TCCGGGTGGA GCGGGACGGC 
GAAAGCCTGG AACTTCGGCC CCAGAAGCGG AACTACAAGG TGCAGCGCAA CATGATGACC 
GAAGCTGCGA TAGACCCCGG TCTGTCCCGC GATCTCTATG TCGCCCTCGG CGAGCCACTG 
GACGGGAACG CCTGGAGCGT GCGGCTCTAC GTCAAACCGT TCATCCGCTG GATCTGGGCC 
GGCGGCCTGT TCATGATCGC CGGGGGCATC CTGTCCGTCA GCGACCGACG CTACCGCCTG 
CCGCTGCCTG AAACCCGCGC AGTTGCCGGA CGCGCCGCGT CCCGTGCAAT TTGA 

 

Protein sequence

MIAELGHIAL IMALLMALLQ GAFPLMGASQ GVDIWMSVAK PAGRAQFLFL LVSFGALTAC 
FVNNDFSVEY VARNSNSALP LYYRIAAVWG SHEGSMLLWA TILGLWTAAV TVFSRSLSED 
FLARVLGIMG LVSVGILLFI LFTSNPFERL TPVPPDGNDL NPLLQDFGMT VHPPMLYMGY 
VGLSVAFAFA IAALLGGSLD SAWARWSRPW TLVAWLFLTG GITLGSWWAY YELGWGGWWF 
WDPVENASFM PWLVATALIH SLAVTEKRGA FKAWTVLLAI FAFSLSLLGT FLVRSGVLTS 
VHAFASDPTR GLFILILLAI VVGGSLLVYT VKAPAVRDVA RYSLVSKENL LLLNNILLVT 
ASGSILLGTL YPLILDALKL GKISVGPPYF GTVFAPLMAP IFLLAGIGPM FAWRESPIGR 
ILHRVRYLFP ASFAAGIALA ALAWDETDFK MMAGLGCAFW LAASACLSLW SRIRLRDGWL 
EGLRAQSPSV YGMTAAHLGV AVFLVGAVLS DRLSQEKLVR MAPGDSVMLA GYAFHFLGTE 
TVQGPNFSAQ QATFRVERDG ESLELRPQKR NYKVQRNMMT EAAIDPGLSR DLYVALGEPL 
DGNAWSVRLY VKPFIRWIWA GGLFMIAGGI LSVSDRRYRL PLPETRAVAG RAASRAI