Gene MCA0254 details

Gene Information

• Locus tag: MCA0254
• Symbol: nifV
• ID: 3103603
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methylococcus capsulatus str. Bath
• Kingdom: Bacteria
• Replicon accession: NC_002977
• Strand: +
• Start bp: 247098
• End bp: 248252
• Gene Length: 1155 bp
• Protein Length: 384 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637169475
• Product: homocitrate synthase
• Protein accession: YP_112788
• Protein GI: 53802529
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0119] Isopropylmalate/homocitrate/citramalate synthases
• TIGRFAM ID: [TIGR02660] homocitrate synthase NifV

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTTGCAC AGCGGGTCAC CATCAACGAC ACCACCCTTC GCGACGGCGA GCAGACCGCC 
GGCGTCGCTT TCACCGCCGA GGAAAAGCTT TCCATAGCTC GTGCGCTGGC TCGGGCCGGC 
GTGCCGGAAA TGGAAGTGGG CATTCCCGTC ATGGGCGCCG AGGAGCAGGA GGTGATCCGG 
GCCATCGCCG GCCTGGGACT ATCGGCCCGG CTGATGGTCT GGGGTCGGAT GTGCGAGCGG 
GATCTGGCGG CGGCCGCCGA TTGCGGCGCC GATCGGGTGA ACCTGTCGAT CCCGGTATCG 
GACATCCATC TCCGCCACAA GGTGAACCGG ACCCGCGAAT GGGTGTTGGC CAGCATCGAC 
CGTTTCGTGA AGCGGGGGCT GGACGCCGGT CTGGAGGTCT GTGTCGGGTG TGAGGATGCC 
TCCCGCGCCG ATCCCGACTT CATGCTGCAG GTCGCAGAGG CGGCGCAGCG GGCCGGCGCC 
CGGCGGATCC GCTTCGCCGA CACCCTGGGC CTGCTGGAGC CGATGTCCAC CTTCGAGCGC 
ATCCGCCGGC TGGCCGTGGC CACCGATCTG GAAATCGAGA TGCACGCCCA CAACGACTTC 
GGCCTGGCGA CGGCCAACAC CCTGATGGCG GTGCAGGCCG GGGCGAGCCA TGTGAACACC 
ACGGTCAACG GACTGGGGGA GCGGGCCGGT AACGCGGCCA TCGAGGAAAC CGTGATGGCT 
CTGCACCAGC TCTATGGCAT CGATACCGGC ATCGCCGTCG ATCATTTCCC GGAGATTTCC 
GGACTGGTGG CGGCCGCCTC CGGCCGGCCG GTGGCCGCGA ACAAGAGCAT CGTCGGCGAG 
GCCGTGTTCA CCCATGAGGC CGGCATCCAT GTCGACGGTC TGCTCAAGAA CCTCATCAAC 
TACCAGGGCG TGGATCCGAA GGATCTGGGC CGTGAGCACC GTCTGGTGCT GGGCAAGCAT 
TCCGGCACCC ACGCGGTGAA GCGGAGCTTC CGCCAGCTCG GGATCGAGCT AAGCGAAACG 
GACGCCGGCA GGCTGCTCAA GCGCATCCGC ATCCACGCCA GCCAGACCAA GCGCCCGCCC 
AGCGAGACCG AACTGAAGCT GTTCTACGCC GAAACCTCGG TGTCGTCCCA GCCGCGTCCG 
GGTCTTTTCG GCTGA 

 

Protein sequence

MVAQRVTIND TTLRDGEQTA GVAFTAEEKL SIARALARAG VPEMEVGIPV MGAEEQEVIR 
AIAGLGLSAR LMVWGRMCER DLAAAADCGA DRVNLSIPVS DIHLRHKVNR TREWVLASID 
RFVKRGLDAG LEVCVGCEDA SRADPDFMLQ VAEAAQRAGA RRIRFADTLG LLEPMSTFER 
IRRLAVATDL EIEMHAHNDF GLATANTLMA VQAGASHVNT TVNGLGERAG NAAIEETVMA 
LHQLYGIDTG IAVDHFPEIS GLVAAASGRP VAANKSIVGE AVFTHEAGIH VDGLLKNLIN 
YQGVDPKDLG REHRLVLGKH SGTHAVKRSF RQLGIELSET DAGRLLKRIR IHASQTKRPP 
SETELKLFYA ETSVSSQPRP GLFG