| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCA0176 |
|---|
| Symbol | |
|---|
| ID | 3104998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylococcus capsulatus str. Bath |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002977 |
|---|
| Strand | - |
|---|
| Start bp | 185617 |
|---|
| End bp | 187227 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637169399 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_112713 |
|---|
| Protein GI | 53802503 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTCGC GGATGAAGCC GGCGGCATCA CGTATTTTCC GCACACGCAT GCGGCGCAGT
AGTCTCATAC CGCTGATACT CCATTTGTCG GCGTGCGTCG ACGGCCCCGC CGTGGATCTG
GCCCCCCCTT ATGAACCCGC CCAGTTCGTC GTCCCCGACT CGTGGCATGG ATCGAGTCCC
TTCGTCGAAG CGAAACCGTC GGACGGCGAG CTGCGCCCGG ACTGGTGGAA GCTTTTCAAC
GACCCGGTCC TGACCCAGCT CGAAGAACAA GCCATGGCAG CCAATGCCGA CCTGCAGGCC
GCCGCGGAGC GCTTCGTCCA GGCCCGGGAC ATGATGATGA AGGTGCGATC GCGTCTGATC
CCGCAGTTCG GGCTGGAATT CGGCGCCTCG GACAATCGGC AGTCCGTCAA TACGCTGTTT
CGCGCACCCA ATGCGCCGAT CGAGCAGTCG GATTATTACA GCGGCGGACT CGCCTCCTGG
GAGCCCGACT TCTGGTCGGC GATCCGCAAC CGGATACGAG CGGAGATTTA CCAGGCCGAA
CAGCGCGCAG CCGAGTACGG GCTCGCGCGC CTGAGCCTGC AGGCGGAAAT CGCTACGGAC
TATTTCACCC TGCGCGGCTA TGACGCACAG GATTCCGTCT ATAAACAGTC GATCGCCTAC
TACAAAAAAT CACTGGAGAT CGTCGACGCC CAGTACAAGG GTGCCATCGT GCCGCAACTC
GATGTCGCCC GCGCCGAATA CCTGTTGCAC AGCACCGAAG CGAAAGAGCT CGACATTCAG
GGCCGACGTC AGGTGACCGA ACATGCGATC GCCATTCTCG TCAACAAGGC GCCGGCCGCT
TTCAGCATCG CGCCGGTCGA CGAGCTGCCA TCACCGGAAT TCACGATTCC GCAGACCATT
CCCGCCACGC TGCTCGAACG CCGGCCCGAC ATCGCCCAGA TGGAGCGCCA GATGGCACAG
GCGAACCGCG CCATCGGCAT CGCCCGCGCA GCGTTCTTCC CGAACGTGGT GTTCAAGGCC
AGCGGAGGCT ACGAGAACGG CAGCATGAAT CTGATCGCGC TCGCTAACAG TTACTGGTCC
TACGGCGCTT CCGTTTCGAT CCCCCTGTTT CAGGGCGGTC TGCGCCGCGC CCAACTGCAG
CAGTCCTGGT CGGCCTACCG CGAAACCGAG GACAAATACC GAGCGACGGT ACTCAACGCC
TTTCGCGAAG TCGAGAACGG ACTGAGCCTG ACCAACCGGC TGAGCGTGGC GGCCGACCGG
CAGGACGAAG CCGTCAAGGC CGCGCTGAAG ACGCAGAATC TGACCATGGA GCTTTATCTG
GGCGGTTTGA TCACCAGCCT CGACCTCATC TACGCCCAGA TCAACACGCT GACGGCGCGC
ATCGACGCGG TGGTGCTCAA GACCGAACGG CTGAAAAACA CGATTGCGCT CATTCGCGCG
CTGGGTGGCG GCTGGAACCG CAAGCAATTG CCCGCCGACG ATCAGATTCA GCCCTTCGGC
GTTTTCGAAG AGTATGGCAA TGCCGGAAAA CCCGCTCCTG CCGGGGGTAT CGACGTGCCG
GCGGACGACA ACAGGCTGAA CAACGACTTG ACCAGACCGT TCAAGCAATA G
|
|---|
| Protein sequence | MGSRMKPAAS RIFRTRMRRS SLIPLILHLS ACVDGPAVDL APPYEPAQFV VPDSWHGSSP
FVEAKPSDGE LRPDWWKLFN DPVLTQLEEQ AMAANADLQA AAERFVQARD MMMKVRSRLI
PQFGLEFGAS DNRQSVNTLF RAPNAPIEQS DYYSGGLASW EPDFWSAIRN RIRAEIYQAE
QRAAEYGLAR LSLQAEIATD YFTLRGYDAQ DSVYKQSIAY YKKSLEIVDA QYKGAIVPQL
DVARAEYLLH STEAKELDIQ GRRQVTEHAI AILVNKAPAA FSIAPVDELP SPEFTIPQTI
PATLLERRPD IAQMERQMAQ ANRAIGIARA AFFPNVVFKA SGGYENGSMN LIALANSYWS
YGASVSIPLF QGGLRRAQLQ QSWSAYRETE DKYRATVLNA FREVENGLSL TNRLSVAADR
QDEAVKAALK TQNLTMELYL GGLITSLDLI YAQINTLTAR IDAVVLKTER LKNTIALIRA
LGGGWNRKQL PADDQIQPFG VFEEYGNAGK PAPAGGIDVP ADDNRLNNDL TRPFKQ
|
|---|
| |