| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP1968 |
|---|
| Symbol | |
|---|
| ID | 3240677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 1987115 |
|---|
| End bp | 1988560 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 637168654 |
|---|
| Product | PTS system, sucrose-specific IIBC components |
|---|
| Protein accession | YP_189524 |
|---|
| Protein GI | 57865419 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific |
|---|
| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component
[TIGR01996] PTS system, sucrose-specific IIBC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000108474 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTATA AAAAATCTGC TGAAGAAATA CTTAAAGCAA TTGGCGGTGA AGAAAATTTA
GATGCAATGG CACATTGTGC AACTCGATTA CGTTTAGTAT TGAACGATGA GAGTAAAGTA
GACGAAGATA CCTTGTCTAA TATGGACGTC GTCAAAGGAA CATTCTCTAC AGGTGGTCAA
TACCAAATTA TTATAGGTTC AGGGACAGTA AATAAAGTAT TTAATGAATT AGAAAAAATA
ACTGGAAAAG AAGCATCTAC GACTTCAGAA GTTAAAGATA AATCATCTAA GCATATGAAT
CCATTCCAAA AATTTGTGAA AATGTTATCT GATATCTTTG TTCCTATTAT TCCGGCTATT
GTAGCTGGTG GTTTGTTAAT GGGATTAAAT AATATTTTCA CAGCTAAAGA TTTGTTTTAT
GATGGTAAAT CTATCATAGA TGTACATAGT CAATTTTCTG GCTTGGCTGA TATGATTAAT
ATATTTGCAA ATGCACCTTT TACATTATTA CCAATACTTA TTGGTTTTAG TGCAGCTAAG
CGATTTGGTG GTAATCCTTA TTTAGGTGCA GCTCTAGGTA TGATACTTGT TCATCCTGGA
TTGATGAGTG CATATGATTT TCCAAAAGCT TTAGAAGAAG GAAAAGCTAT TCCACACTGG
GATGTCTTTG GGCTACATAT TAATGAAGTA GGTTATCAGG GACAAGTATT ACCTATGCTC
GTAGCAACAT ATATTTTAGC TACGATTGAA AAATGGTTAC GTAAAGTTAT TCCAACTGTG
TTAGATAATT TATTGACGCC ATTATTATCA ATTTTTATTA CAGCATTTAT AACATTTTTA
TTTGTAGGGC CTGTCACTCG TCAATTAGGT TATTGGTTAT CTGATGGATT GACTTGGTTA
TATGAATTTG GTGGAGCTAT TGGTGGACTT ATATTTGGTT TATTATATGC GCCAATCGTC
ATTACAGGAA TGCACCATAG CTTTATTGCA GTTGAAACGA CATTAATTGC TGATGCGACT
AAAACAGGTG GTTCATTTAT CTTCCCAATC GCAACGATGT CAAATATTGC ACAAGGTGGT
GCAGCTTTAG CTGCATTCTT TATCATTAAG CAAAATAAAA AATTAAAAGG TGTTGCTTCC
GCGGCGGGTA TTTCAGCTTT ACTAGGAATT ACAGAACCAG CAATGTTTGG TGTCAATCTT
AAATTGAGAT ATCCATTTAT AGGTGCTGTT GCAGGATCAG GTATAGGTGC GGCTTATATT
TCATTCTTCA AAGTAAAAGC GATAGCGCTT GGTACAGCTG GATTACCTGG ATTTATATCT
ATAAATCCTA CACACGCTGG TTGGTTACAT TACTTAATAG GAATGCTAAT TGCATTTGTT
GTTTCAGTTG TCGTCACTTT AGTACTTTCT CGAAGAAAAA CAAATAAGAC AGCTGTTGAA
TCATAG
|
|---|
| Protein sequence | MSYKKSAEEI LKAIGGEENL DAMAHCATRL RLVLNDESKV DEDTLSNMDV VKGTFSTGGQ
YQIIIGSGTV NKVFNELEKI TGKEASTTSE VKDKSSKHMN PFQKFVKMLS DIFVPIIPAI
VAGGLLMGLN NIFTAKDLFY DGKSIIDVHS QFSGLADMIN IFANAPFTLL PILIGFSAAK
RFGGNPYLGA ALGMILVHPG LMSAYDFPKA LEEGKAIPHW DVFGLHINEV GYQGQVLPML
VATYILATIE KWLRKVIPTV LDNLLTPLLS IFITAFITFL FVGPVTRQLG YWLSDGLTWL
YEFGGAIGGL IFGLLYAPIV ITGMHHSFIA VETTLIADAT KTGGSFIFPI ATMSNIAQGG
AALAAFFIIK QNKKLKGVAS AAGISALLGI TEPAMFGVNL KLRYPFIGAV AGSGIGAAYI
SFFKVKAIAL GTAGLPGFIS INPTHAGWLH YLIGMLIAFV VSVVVTLVLS RRKTNKTAVE
S
|
|---|
| |