| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP1619 |
|---|
| Symbol | |
|---|
| ID | 3240596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 1642111 |
|---|
| End bp | 1644396 |
|---|
| Gene Length | 2286 bp |
|---|
| Protein Length | 761 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637168300 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_189184 |
|---|
| Protein GI | 57867548 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00216862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAG AATTTAAAGA ATTTAGAGAG AGATTAGTAG TAAGTAAGCA GCTATTCTAT
AATGATAGTA GCATGTTTGG TGCTTATGGT TTTAGCTTTG AAGGAGAAAT TAACCCGGAG
ATAACAGTTC ATCCTCAATA TAGAAATTTT TCTATTGCTG GTAATGTTCA GCCATTAGTA
GAAGGAGAGG CTTATACTGT TAGATTTAAA GAGAGCTACG ATGAAAGAAG AAAAATTGAT
ACATATACTT TTATTGAAGT GGAGTCAGAT GGTATTTCAG GCAAAAAGGC GAATGAAGAG
TTTTTAAGAG TAATATTGAC AGATAATCAA GCGGAAGCAA TTATTGATGA ATTTGGTTAT
AGTGACGAGT TAGTAAAAGA TATTCTTAAT GACAAGGTTG ATATTACAGA AGTAAAAGGA
ATTAAGAGTG CTACTGCTTT ATCCATTAAA GAAAAGCTTA CTGAGATGTC TAAGTATAGC
AAGGCAGTTA TAGAGTTAGC ACCCTTAGGA GCGAGTATTA AAGCAGTTGT TTCTCTAGCC
GATCATTATG GATCAGTAGA AAAATTATTA CATATCATAG AAAATAATAT ATATGATTTG
ACATCTGCTG GTGGCTTTGG TTTTAAGCGT ATAGATGAAT ATGGCTTGAA AAAAGGTATT
AGTATTGACT CACCACAAAG AATTAGAGCT GGTGCTTTAT ACGTTATAGA ACAAATGGTA
GCACTTGGAG ATACAAAGCT TAGTATTGAT AAATTTGAAG AAAACTTATG TGACATATTA
GAAATTGATG AGGTTGACGA TGAAACATTT AGTTTGATTA TCAACGATCC GAATGTATAT
TACGACAATG GATATATCAG TTTAAAGAAA TATCGAAGAG AAGAAGAACT AATCGTAGAG
CATTTAAGAA GAATAAGAGA TAGTTTCACC TCATATGATA CAAACGAGCT TGAAGATATT
ATCAAAATGA ATGAGGATCG ACTAGGTTTC ACATTCAATG AGCAGCAAAA AGAAGCGATT
AGGAAAGCTG TAAGCAACGG AGTATTTATA CTTGATGGAC TCGCTGGTTC AGGTAAGACT
TCAAGTTTAA AAACCGCAAT TGATATTATC GGTTTACCAC ATGTTGCTTG TGCATTGAGT
GGTAAAGCAG CAAACGTACT GTCACAAAAC GGACTAAAAG CAAAAACTAT ACATAGAACA
CTTAGATTTG ATCCAGTGAA TTTTGGTTTT TTACATAACG AAGAAAACCC ATTGAGCGAA
AAAGTAGTTA TTCTAGATGA AGCCTCAATG GTTGATAATA AACTGTTTTT AGACTTAATT
AAAGCTGTGG AAAGCGGTTC TCAATTAATG ATTGTAGGAG ACAGTGGACA ATTACCTTCG
ATCAGTAGAG GAGCAGTATT TGACAACTTA CTTGATACAA CAGAATTTGA ACATGTAACT
CTAACTGAGG TACATAGACA AGCAAAAGAG TCTGGCACAT TACAAGTTGC TAACAAGATA
CGTGAAGGTA CTCAATTTAA TGGTTACACT GATTATGGCT TAACTGTTTA TGGTGATAAC
AAAGATTTTT ATTACTTTGG TTTCCAAGAT AGAGCGGCTA TTAAAGATAA TTTATTACAT
ACTGTGAAAC GTTATTTAAG TAATAAGGAT ATGAACCCAA ATGATATTCA AGTTATTACT
GGTTTAAAAG AAAAAGGAGA ATTGTCAGTA GTTAACTTGA ATAAAGAATT ACAAGAATTG
TTTAACCCTC AGAAAATAGT TCAAAATACA TTGACTGGTA AGGTTTATGA GTTTAGAAAA
GGTGACAGGG TTATTCAGCA AGGTAACAAA TACACTGCTA GAACATTAGG TTATAGTGAT
TTCCAAGATG TAGCGAATGG CTTTGCGTTA TTGGAAAACA AGACTTTCGA AGAAACTGAA
GTATTTAACG GTACATTTGG AGAAATCATT GAATGTGCAA GTGGTGTAGG AATGTTGATT
AAATTTGAGG GTGTGGAAGA ATTAGTATTC TACGAACATA CTCAGAAAAC TAACGAGATA
GGTATAATTG ATTTAGGATA TGCAATTAGT TGTCACCGTT CACAAGGTAG CGGGTTTAAA
ACATTGGTTG GTGCATTATC ATTTAGTGAT TACATGTTGC TAAGTAGACA ATTTTTATAC
ACAATGCTAA CTAGAACGAT CAATCAATGT TTCTTATTTG CAGAAACATC AGCAGTACAT
TATTCGATTA AAACTGATAA AGGTAAAACT AGAAAATGTT TTATCAGTGA ATTTTTAGAA
CACTAA
|
|---|
| Protein sequence | MEKEFKEFRE RLVVSKQLFY NDSSMFGAYG FSFEGEINPE ITVHPQYRNF SIAGNVQPLV
EGEAYTVRFK ESYDERRKID TYTFIEVESD GISGKKANEE FLRVILTDNQ AEAIIDEFGY
SDELVKDILN DKVDITEVKG IKSATALSIK EKLTEMSKYS KAVIELAPLG ASIKAVVSLA
DHYGSVEKLL HIIENNIYDL TSAGGFGFKR IDEYGLKKGI SIDSPQRIRA GALYVIEQMV
ALGDTKLSID KFEENLCDIL EIDEVDDETF SLIINDPNVY YDNGYISLKK YRREEELIVE
HLRRIRDSFT SYDTNELEDI IKMNEDRLGF TFNEQQKEAI RKAVSNGVFI LDGLAGSGKT
SSLKTAIDII GLPHVACALS GKAANVLSQN GLKAKTIHRT LRFDPVNFGF LHNEENPLSE
KVVILDEASM VDNKLFLDLI KAVESGSQLM IVGDSGQLPS ISRGAVFDNL LDTTEFEHVT
LTEVHRQAKE SGTLQVANKI REGTQFNGYT DYGLTVYGDN KDFYYFGFQD RAAIKDNLLH
TVKRYLSNKD MNPNDIQVIT GLKEKGELSV VNLNKELQEL FNPQKIVQNT LTGKVYEFRK
GDRVIQQGNK YTARTLGYSD FQDVANGFAL LENKTFEETE VFNGTFGEII ECASGVGMLI
KFEGVEELVF YEHTQKTNEI GIIDLGYAIS CHRSQGSGFK TLVGALSFSD YMLLSRQFLY
TMLTRTINQC FLFAETSAVH YSIKTDKGKT RKCFISEFLE H
|
|---|
| |