Gene SERP1442 details

Gene Information

• Locus tag: SERP1442
• Symbol: ligA
• ID: 3241955
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Staphylococcus epidermidis RP62A
• Kingdom: Bacteria
• Replicon accession: NC_002976
• Strand: -
• Start bp: 1505601
• End bp: 1507598
• Gene Length: 1998 bp
• Protein Length: 665 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 637168127
• Product: DNA ligase, NAD-dependent
• Protein accession: YP_189011
• Protein GI: 57867376
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.474438
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAGGTG TTAAAAAGCG TGTGGAAAAA TTACATGACT TATTGAATCA ATATAGTTAT 
GAATATTATG TACAAGATAA TCCCTCAGTG CCTGACAGTG AGTATGATAA GTTATTACAT 
GAGCTGATTG AAATTGAAGA AAAATATCCA GAATTCAAAT CGACAGACTC TCCAACAGTG 
CGTGTGGGTG GCGAAGCTCA GTCTTCTTTT GAAAAAGTAA ATCACGACAC GCCTATGTTA 
AGTTTAGGTA ATGCTTTTAA TGAAGAAGAT TTAAGAAAAT TTGATCAACG TATTCGTGAT 
AGTATTGGTA AGGTCGAATA CATGTGTGAA CTTAAAATAG ATGGTTTGGC TGTTTCGCTC 
AAATATGAAA ATGGTCGTTT TGTTCAAGGA CTTACACGTG GTGATGGTAC GACAGGTGAG 
GATATCACTG AAAATCTAAG AACTATACAT GCTATACCAC TAAAAATTAA AGAACCTCTC 
AATTTTGAGG TCCGTGGGGA AGCTTATATG CCACGTCGTT CATTCATTCA TTTGAATAAT 
GAAAAAGAAC AAAATGGTGA ACAACCTTTT GCAAATCCAC GAAACGCTGC TGCAGGCTCT 
TTAAGACAAC TTGACTCTAA ACTAGCTGCG AAAAGAAAGT TAAGCGTCTT CTTATATAGT 
GTGAATGACC TAACCGAGTT TAATGCAACA ACACAAAGTG AAGCGCTAGA GGAATTGGAC 
CAATTAGGTT TTAAAACTAA CCAAGAACGT GAACGAGTAT CAGATATTGA GGGCGTACTT 
AATTATATAG AGAAATGGAC AAGCAAAAGA GGATCTTTAT CTTACGATAT TGATGGTATT 
GTTATAAAAG TTAACGATTT ATCTCAACAA GAGGAAATGG GTTATACGCA AAAATCTCCA 
AGATGGGCGA TTGCTTATAA ATTTCCAGCT GAAGAAGTTA TTACAAAATT ATTGGATATT 
GAGCTAAGTA TTGGGCGTAC GGGTGTTGTG ACACCAACTG CAATTCTAGA ACCTGTAAAA 
GTAGCTGGTA CTACAGTTTC AAGAGCCTCA CTTCATAATG AAGATTTAAT ACATGAAAGA 
GATATACGTA TCGGAGATAG TGTTGTTATT AAAAAAGCCG GGGACATCAT CCCTGAAGTT 
GTAAAAAGTA TTTTAGATAG ACGACCTAAC GAATCGGAAA TTTATCATAT GCCAACACAT 
TGTCCTAGTT GTGGACATGA ATTAGTTCGT ATTGAAGGAG AAGTTGCTTT ACGTTGTATT 
AATCCAAAAT GTCAGGCACA GCTTATTGAA GGACTTATAC ATTTCGTTTC AAGACAAGCG 
ATGAATATAG ATGGTTTAGG TACTAAAATT ATTCATCAGC TATACGAAAA TCAGTTAATC 
AAAGATGTCG CAGATATTTT CTATTTGAAA GAAGAAGATT TATTACCATT AGAGAGAATG 
GGAAAGAAGA AAGTTGATAA TCTTTTATTA GCGATAGAAA AATCTAAAGA ACAGTCATTA 
GAGCATTTAT TATTTGGACT GGGTATTAGA CATTTAGGTG TAAAAGCTAG TCAAGTACTT 
GCTGAGCGAT ATGAAACGAT GGATCAACTT TTTAAAGTAA CTGAAAGTGA ATTAATTGAA 
ATTCAAGATA TTGGAGATAA ACTTGCACAA TCTGTTGTAA CATATCTCGA AAATAGTGAT 
ATTCGTTCAT TAATTGAAAA ATTAAGTAAT AAAAATGTTA ATATGTCTTA TAAAGGAATT 
AAAACAACTG AAATCGAAGG TCATCCTGAT TTTAGTGGGA AAACAATTGT ATTAACAGGG 
AAACTCGAGC AAATGACGAG AAATGAAGCA TCTGAATGGT TGAAAATGCA AGGTGCTAAA 
GTTACAAACA GCGTGACTAA AAGTACTGAT ATTGTCATAG CTGGAGCAGA TGCAGGGTCT 
AAATTAGCCA AAGCTGAGAA GTATGGTACT GAAATTTGGA CTGAAGCAGC ATTTATTGAA 
AAACAAAATG GAATCTAA 

 

Protein sequence

MQGVKKRVEK LHDLLNQYSY EYYVQDNPSV PDSEYDKLLH ELIEIEEKYP EFKSTDSPTV 
RVGGEAQSSF EKVNHDTPML SLGNAFNEED LRKFDQRIRD SIGKVEYMCE LKIDGLAVSL 
KYENGRFVQG LTRGDGTTGE DITENLRTIH AIPLKIKEPL NFEVRGEAYM PRRSFIHLNN 
EKEQNGEQPF ANPRNAAAGS LRQLDSKLAA KRKLSVFLYS VNDLTEFNAT TQSEALEELD 
QLGFKTNQER ERVSDIEGVL NYIEKWTSKR GSLSYDIDGI VIKVNDLSQQ EEMGYTQKSP 
RWAIAYKFPA EEVITKLLDI ELSIGRTGVV TPTAILEPVK VAGTTVSRAS LHNEDLIHER 
DIRIGDSVVI KKAGDIIPEV VKSILDRRPN ESEIYHMPTH CPSCGHELVR IEGEVALRCI 
NPKCQAQLIE GLIHFVSRQA MNIDGLGTKI IHQLYENQLI KDVADIFYLK EEDLLPLERM 
GKKKVDNLLL AIEKSKEQSL EHLLFGLGIR HLGVKASQVL AERYETMDQL FKVTESELIE 
IQDIGDKLAQ SVVTYLENSD IRSLIEKLSN KNVNMSYKGI KTTEIEGHPD FSGKTIVLTG 
KLEQMTRNEA SEWLKMQGAK VTNSVTKSTD IVIAGADAGS KLAKAEKYGT EIWTEAAFIE 
KQNGI