Gene SERP1328 details

Gene Information

• Locus tag: SERP1328
• Symbol: ribD
• ID: 3241715
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Staphylococcus epidermidis RP62A
• Kingdom: Bacteria
• Replicon accession: NC_002976
• Strand: -
• Start bp: 1388743
• End bp: 1389786
• Gene Length: 1044 bp
• Protein Length: 347 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 637167977
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_188900
• Protein GI: 57867218
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.03575
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAGTAGAT TTATGGATGA TGCTATTCAA TTAGCAAAAA TGGTAAATGG ACAAACAGGT 
GTTAATCCAC CAGTAGGATC CGTTGTTGTT AAAAACGGTA GGATTGTAGG TTTAGGTGCA 
CATTTAAAAA AGGGAGATAA ACATGCCGAA GTACAGGCTA TTGAAATGGC AGGTTTAAAT 
ACCCAAGGTG CTACCATATA CGTTTCATTA GAACCTTGTA CACACCATGG TTCAACGCCA 
CCTTGTGTGG ATAAAATCAT TGAAGCGGGC ATATCTAAGG TCATCTATGC TGTTAAAGAT 
ACTACTTTAG TAAGTAAGGG TGACGAGATT CTGAGAGAAG CTGGTATAGA GGTTGAATTT 
CAATATAATG AAAATGCAGC TGCATTATAC CGTGACTTTT TTACTGCTAA AAGAAACGAA 
GTTCCAGAAG TAACTGTAAA GGTCTCATCT AGTTTAGATG GTAAACAAGC AACAGACTTT 
AATGAAAGTA AGTGGATAAC AAACAAAGAA GTTAAAGAAG ATGTTTATCA ATTAAGACAT 
GAGCATGATG CAGTTATTAC TGGGCGTAGA ACCATTGAAG CAGACAATCC ATTGTATACA 
ACCAGGGTTC CTGATGGAAA GCATCCGATT CGAGTTATTC TTTCTAAGAA AGGTCAACTC 
GATTTTAATC AACAAATATT TAAAGATACT GCATCGGAGA TATGGATTTA CACTGAAAAT 
GAAAAATTAA AAACAAATAA AAGTTTTATT AAAATAATAA ATATAAGTAA TTGTGATACA 
ACGACAATAT TACAAGACTT ATATCAAAGA GGTATTGGGA AACTGCTAGT CGAGGCAGGC 
CCAAATATTA CATCTCAATT TCTCCAATCC AAACATCTAA ATGAACTCAT TTTATATATA 
GCCCCGAAAT TAATTGGTGG TTCTGGCAAA CATCAATTTT ATAAGACTGA CGAGGTCATT 
GATTTGCCTG AAGCAACTCA ATTTGAAATT GTTGATTCCA AGTTAATTAA TCAAAATTTA 
AAATTGAAAT TACGAAAGAA GTGA 

 

Protein sequence

MSRFMDDAIQ LAKMVNGQTG VNPPVGSVVV KNGRIVGLGA HLKKGDKHAE VQAIEMAGLN 
TQGATIYVSL EPCTHHGSTP PCVDKIIEAG ISKVIYAVKD TTLVSKGDEI LREAGIEVEF 
QYNENAAALY RDFFTAKRNE VPEVTVKVSS SLDGKQATDF NESKWITNKE VKEDVYQLRH 
EHDAVITGRR TIEADNPLYT TRVPDGKHPI RVILSKKGQL DFNQQIFKDT ASEIWIYTEN 
EKLKTNKSFI KIINISNCDT TTILQDLYQR GIGKLLVEAG PNITSQFLQS KHLNELILYI 
APKLIGGSGK HQFYKTDEVI DLPEATQFEI VDSKLINQNL KLKLRKK