| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP1312 |
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| Symbol | |
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| ID | 3241691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Staphylococcus epidermidis RP62A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002976 |
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| Strand | - |
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| Start bp | 1361364 |
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| End bp | 1362056 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 637167961 |
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| Product | pseudouridine synthase family 1 protein |
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| Protein accession | YP_188884 |
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| Protein GI | 57867194 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0766504 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGATTAG ATAAATTTCT AGCTAATATG GGTGTTGGAA CGCGATCAGA AGTTAAACAG
TTACTCAAAA AAGGATCTGT TAAAGTCAAC CAAAATATAG TTAAGTTACC TAAACTTCAT
GTTAATCCTA ATTCTGATGA GATAATGGTA AATGATGAAG TAGTTAGTTA TATCGACAAA
GTGTATATCA TGTTAAACAA ACCTAAAGGT TATATTTCAG CGACAGAGGA TGAGTTGCAT
CCTACTATTA TTGATTTGAT ACCTGAATAT GCACATTTAA ATATTTTTCC GGTCGGACGT
TTGGACAAAG ATACAGAAGG ATTACTCCTT GTTACAAATG ATGGACAGTT TAATCATGAA
GTAATGAATC CCAATAAGCA TGTTTCAAAG ACTTATGAAG TCTATTCAAA ACACCCAATA
ACTCAATTCG ATATTGATAA ATTTAAATCC GGAATAGAAT TATCAGATGG GAAATTAAAG
CCTGCAATTT TAAAGAAAGT TGATGATTAT GTATCACATG TCACTATTTA CGAAGGAAAA
TATCATCAAG TTAAAAGAAT GTTTCATAGT ATCGAAAATG AGGTATTAGA ATTGAAACGC
ATAAAGATTG CTCAACTAGA ACTAGATCAT AATTTAGATT TGGGTAGTTA TCGTTTGTTA
ACACAAATAG ATTTTGATAA TCTTAAGAAC TAA
|
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| Protein sequence | MRLDKFLANM GVGTRSEVKQ LLKKGSVKVN QNIVKLPKLH VNPNSDEIMV NDEVVSYIDK
VYIMLNKPKG YISATEDELH PTIIDLIPEY AHLNIFPVGR LDKDTEGLLL VTNDGQFNHE
VMNPNKHVSK TYEVYSKHPI TQFDIDKFKS GIELSDGKLK PAILKKVDDY VSHVTIYEGK
YHQVKRMFHS IENEVLELKR IKIAQLELDH NLDLGSYRLL TQIDFDNLKN
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