| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP1123 |
|---|
| Symbol | nfo |
|---|
| ID | 3242904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 1161580 |
|---|
| End bp | 1162470 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 637167776 |
|---|
| Product | endonuclease IV |
|---|
| Protein accession | YP_188699 |
|---|
| Protein GI | 57867090 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0648] Endonuclease IV |
|---|
| TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.212537 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAATAG GATCACATGT TTCAATGAGT GGCAAAAAAA TGCTGCAAGG GTCAGCAGAA
GAAGCACATA AATATGGTGA ATCTACATTT ATGATTTATA CAGGTGCGCC TCAAAATACA
AGACGTAAAA ATATTGAAGA TTTAAATATC GAAAAAGGCC AGCAGGCAAT GAAAACATAT
GGCTTATCAA ATATCGTTGT ACATGCACCA TATATCATTA ACATTGCAAA TACAACCAAA
CCTGAAGTAT TTAATTTAGG AGTCGACTTT CTACAAAAAG AAATCGAAAG AACTCAAGCG
CTCGGAGCGA AAGATATTGT ACTGCATCCT GGAGCGCATG TCGGAGCAGG TGTAGATAAA
GGAATTCAAA AAATTATTGA AGGACTTAAT GAAGTACTCA CACATGATAA TGATGTAAGA
ATAGCACTTG AAACTATGGC GGGTAAAGGA ACAGAAGTAG GGAGATCTTT TGAAGAAATT
GCTCAAATAA TTGATGGTGT TACACATAAT GATCGCTTAT CAGTATGTTT TGATACGTGC
CACACTCATG ATGCCGGTTA TAACGTCAAA GAAGATTTCG ATGGTGTACT AGAAAAATTC
GACAGCATAA TTGGAGTAGA TCGAATTAAA GTAGTACATG TTAATGACAG TAAAAACCTA
AGAGGTGCAC AGAAGGATCG TCACGAAAAT ATCGGCTTTG GTCATATTGG CTTTGATGCA
CTTAATTACG TAGTACATCA TGATACTTTT AAAAATATTC CCAAAATATT AGAAACTCCA
TATGTTGGTG AAGATAAAAA AAATAAAAAA CCACCGTATA AATTAGAAAT AGACATGTTA
AAATCACAAA AATTTGATCC AGAACTCAAA AACAAAATTT TAACTCAATA A
|
|---|
| Protein sequence | MLIGSHVSMS GKKMLQGSAE EAHKYGESTF MIYTGAPQNT RRKNIEDLNI EKGQQAMKTY
GLSNIVVHAP YIINIANTTK PEVFNLGVDF LQKEIERTQA LGAKDIVLHP GAHVGAGVDK
GIQKIIEGLN EVLTHDNDVR IALETMAGKG TEVGRSFEEI AQIIDGVTHN DRLSVCFDTC
HTHDAGYNVK EDFDGVLEKF DSIIGVDRIK VVHVNDSKNL RGAQKDRHEN IGFGHIGFDA
LNYVVHHDTF KNIPKILETP YVGEDKKNKK PPYKLEIDML KSQKFDPELK NKILTQ
|
|---|
| |