| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0920 |
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| Symbol | |
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| ID | 3241522 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Staphylococcus epidermidis RP62A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002976 |
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| Strand | + |
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| Start bp | 930290 |
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| End bp | 931930 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637167576 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_188499 |
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| Protein GI | 57866849 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0705081 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCTT CTTCACAAGA GAAGAAAAAT AAAAAGTTTT CTTCGGTTTT CATCTATAGT
TCAATTATTG CAGCTATAGT AGTGATTATC GGTGCTGTTT GGCCTGAGAA ATTCGATAGC
GTTACTAATA CGGCTAAGAT GTGGATTACT AATAATTTGG GTTGGTATTA CCTTATTTTA
ACAACAGTAA TTGTATTCTT CTGTGTTTTC TTGATTTTCA GTCCAATTGG GAAACTTAAA
TTAGGTAAAC CTAATGACAA ACCAGAATTT AATACAATTT CTTGGTTCGC AATGCTATTC
AGTGCTGGTA TGGGTATTGG TTTAGTATTC TATGGTGCAG CTGAACCTAT GGCACATTTT
GCTGCTCCAC CAACAGCTGA TCCTGAAACG ACAAAGGCCT ACACTGAGTC TTTAAGATCT
ACATTTTTCC ATTGGGGATT CCATGCTTGG GCAATTTATG GCGTGGTAGC TTTAGCACTT
GCTTATTCTC AATTCCGTAA AGGTGAACCT GGATTAATTT CTAGAACCTT ACGTCCATTA
TTGGGAGATA AAGTTGAAGG ACCAATAGGT ACTCTTATTG ATGTACTTTC TGTTTTTGCT
ACATTAGTTG GTGTAGCTGT GTCTCTAGGT ATGGGCGCAC TTCAAATTAA TGGTGGCTTG
CATTATTTAT TTGGTGTGCC GAACAACACT TTTGTTCAAG GTATTATTAT TGTTGTCGTA
ACAATTTTAT TTATTGCTAG TGCTTGGTCA GGTTTAAGCA AGGGAATTCA ATATTTAAGT
AATTTAAATA TAGGTCTTGG TACGATATTA ATGATTGTAA CCTTAATTGT TGGACCAACT
GTTTTAATCT TAAATATGAT GACAAGTTCT ACGGGTAGCT TATTAAATTC ATTCTTATTT
AACAGTTTTG ATACTGCTGC GTTAAACGGT CAAAAGCGTG ATTGGATGTC AACTTGGACA
TTATACTATT GGGGTTGGTG GCTAAGTTGG AGTCCATTCG TTGGTGTATT CATCGCACGT
GTATCTAAAG GACGTTCTAT AAGAGAATTT ATTTCAGGTG TTTTATTAGT ACCGGCACTT
GTTAGCTTTA TATGGTTCAG TGTTTTCGGC GTATTAGGCA TTGAAGCTGG TAAAAAAGAT
TCGGGTCTCT TTAAAATGTC ACCTGAAACA CAGTTATTTG GTGTATTCAA CCATATTCCG
TTAGGTATTG TTTTATCTAT CATTGCATTA TTGCTTATCG CTTCTTTCTT TGTTACTTCA
GCTGACTCAG CAACATTCGT ATTAGGTATG CAAACTACAT TTGGATCATT AAATCCAAGT
AGTCTAGTTA AAGTAACCTG GGGAGTTGCG CAAGCACTTA TTGCCTTTGT ACTATTATTA
GCTGGTGGAG GAGATGGCTC TAAAGCCTTG AATGCTATTC AAAGTGCTGC CATTATAAGT
GCCTTCCCAT TCTCATTCGT CGTCATAATG ATGATGATAA GTTTCTACAA AGATGCAAAT
AAGGAACGTA AATTCCTTGG ATTAACACTT ACGCCAAATA AACATCGCTT ACAAGAATAT
GTTAAATATC AACAAGAAGA TTATGAAACA GATATTCTTG AAAAAAGAGA AGTTAGAAGA
AATAAAGAAA AAGAAGAATA G
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| Protein sequence | MNSSSQEKKN KKFSSVFIYS SIIAAIVVII GAVWPEKFDS VTNTAKMWIT NNLGWYYLIL
TTVIVFFCVF LIFSPIGKLK LGKPNDKPEF NTISWFAMLF SAGMGIGLVF YGAAEPMAHF
AAPPTADPET TKAYTESLRS TFFHWGFHAW AIYGVVALAL AYSQFRKGEP GLISRTLRPL
LGDKVEGPIG TLIDVLSVFA TLVGVAVSLG MGALQINGGL HYLFGVPNNT FVQGIIIVVV
TILFIASAWS GLSKGIQYLS NLNIGLGTIL MIVTLIVGPT VLILNMMTSS TGSLLNSFLF
NSFDTAALNG QKRDWMSTWT LYYWGWWLSW SPFVGVFIAR VSKGRSIREF ISGVLLVPAL
VSFIWFSVFG VLGIEAGKKD SGLFKMSPET QLFGVFNHIP LGIVLSIIAL LLIASFFVTS
ADSATFVLGM QTTFGSLNPS SLVKVTWGVA QALIAFVLLL AGGGDGSKAL NAIQSAAIIS
AFPFSFVVIM MMISFYKDAN KERKFLGLTL TPNKHRLQEY VKYQQEDYET DILEKREVRR
NKEKEE
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