| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0816 |
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| Symbol | topA |
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| ID | 3242835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Staphylococcus epidermidis RP62A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002976 |
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| Strand | + |
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| Start bp | 819790 |
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| End bp | 821859 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637167475 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_188398 |
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| Protein GI | 57866716 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.996687 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCAGATA ATTTAGTCAT TGTTGAATCG CCTGCAAAAG CTAAAACCAT TGAAAAATAT
TTAGGCAAAA GATATAAAGT TATTGCTTCA ATGGGACATG TTCGTGACTT ACCAAGAAGT
CAAATGGGTG TCGACACTGA AGATAACTAT GAACCAAAAT ATATTACAAT TCGTGGCAAA
GGTCCTGTAG TTAAAGATTT AAAAAAACAT GCGAAAAAAG CAAAAAAAAT ATTTTTAGCT
AGTGACCCTG ACCGTGAAGG TGAAGCGATT GCTTGGCATT TATCAAAAAT TTTAGAATTA
GAAGATAGCA AAGAAAATAG AGTAGTATTT AATGAAATTA CAAAAGATGC TGTTAAAGAT
AGTTTTAAGC ATCCTCGTGG TATTGAAATG GATTTAGTTG ACGCGCAACA AGCACGTCGT
ATTTTAGATA GACTCGTTGG TTATAATATT TCTCCAGTAT TATGGAAGAA AGTTAAAAAA
GGGCTGTCTG CTGGGAGAGT TCAGTCAGTT GCTTTACGTT TAGTCATTGA TCGTGAAAAT
GAAATTCGTA ATTTTAAACC TGAAGAGTAT TGGTCCATTG AAGGTGAATT TAGATACAAG
AAATCTAAAT TTACAGCTAA ATTTCTACAC TATAAAAATA AACCTTATAA GCTAAACAAC
AAAGACGATG TTCAAAGGAT TACTGAAGCA TTAAATGGTG ATCAATTTGA AATCACAAAT
GTGAATCGTA AAGAAAAAAC ACGTTATCCT GCTCATCCAT TTACTACATC AACCTTACAA
CAAGAAGCTG CACGTAAACT AAATTTTAAA GCACGCAAGA CAATGATGTT AGCACAACAA
TTATACGAAG GTATTGACTT AAAGCGTCAA GGTACAGTAG GTTTAATTAC GTATATGCGT
ACCGATTCTA CTCGTATATC AACTTCTGCA AAATCAGAAG CGCAGCAATA TATAAATGAT
AAATATGGTG AACAGTACGT GTCTCAGCGT AAATCATCGG GTAAACAGGG CGATCAAGAT
GCTCACGAAG CTATTAGACC TACTAGTACA ATGCGAACTC CTGATGACAT GAAAGCTTTT
CTTACTAGAG ATCAACACCG TCTATACAAA TTAATTTGGG AAAGATTTGT AGCAAGTCAG
ATGGCTCCAG CTATTTTGGA TACAGTAGCT TTAGATGTAA CTCAAAACGA CATTAAATTT
AGAGCTAATG GTCAAACTAT TAAATTTAAA GGTTTTATGA CACTATATGT AGAAGCAAAA
GATGATAAAG AGAATGATAA AGAAAATAAG CTTCCTCAAC TAGATAAAGG AGATAAGGTA
ACTGCGACAA AGATTGAACC GGCACAACAC TTTACACAAC CTCCTCCTCG TTATACTGAG
GCGCGTTTAG TTAAAACGCT TGAGGAACTT AAAATTGGAA GACCTTCAAC ATATGCTCCA
ACCATTGATA CGATTCAAAA GCGGAACTAC GTCAAGTTAG AAAGTAAACG CTTCATCCCA
ACTGAATTAG GAGAAATTGT TTATGAGCAA GTTAAAGAAT ACTTCCCAGA AATTATTGAT
GTAGAATTCA CTGTAAACAT GGAAACATTA CTTGATAAAA TTGCCGAAGG TGACATGAAT
TGGCGTAAAG TAATAGGAGA CTTCTACAAC AGTTTTAAAC AAGATGTTGA ACGCGCAGAA
TCTGAAATGG AAAAGATTGA GATTAAAGAC GAGCCAGCTG GTGAAGATTG TGAAGTCTGT
GGTTCTCCAA TGGTTATTAA AATGGGAAGA TATGGTAAGT TTATGGCATG TTCGAACTTT
CCGGACTGTC GTAACACCAA AGCAATTGTC AAAACGATTG GTGTCACATG TCCGAAGTGT
AATGAAGGAG ATGTCGTAGA ACGTAAATCA AAGAAAAATA GAATTTTCTA TGGTTGTTCT
AGATATCCAG AATGTGATTT TATTTCTTGG GATAAACCTG TTGGAAGAGA TTGTCCTAAG
TGTCATCATT ACCTTGTGAA CAAGAAAAAA GGTAAAAGTA GTCAAGTTGT GTGCTCCAAC
TGTGATTATG AAGAAGAAGT TCAAAAATAG
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| Protein sequence | MADNLVIVES PAKAKTIEKY LGKRYKVIAS MGHVRDLPRS QMGVDTEDNY EPKYITIRGK
GPVVKDLKKH AKKAKKIFLA SDPDREGEAI AWHLSKILEL EDSKENRVVF NEITKDAVKD
SFKHPRGIEM DLVDAQQARR ILDRLVGYNI SPVLWKKVKK GLSAGRVQSV ALRLVIDREN
EIRNFKPEEY WSIEGEFRYK KSKFTAKFLH YKNKPYKLNN KDDVQRITEA LNGDQFEITN
VNRKEKTRYP AHPFTTSTLQ QEAARKLNFK ARKTMMLAQQ LYEGIDLKRQ GTVGLITYMR
TDSTRISTSA KSEAQQYIND KYGEQYVSQR KSSGKQGDQD AHEAIRPTST MRTPDDMKAF
LTRDQHRLYK LIWERFVASQ MAPAILDTVA LDVTQNDIKF RANGQTIKFK GFMTLYVEAK
DDKENDKENK LPQLDKGDKV TATKIEPAQH FTQPPPRYTE ARLVKTLEEL KIGRPSTYAP
TIDTIQKRNY VKLESKRFIP TELGEIVYEQ VKEYFPEIID VEFTVNMETL LDKIAEGDMN
WRKVIGDFYN SFKQDVERAE SEMEKIEIKD EPAGEDCEVC GSPMVIKMGR YGKFMACSNF
PDCRNTKAIV KTIGVTCPKC NEGDVVERKS KKNRIFYGCS RYPECDFISW DKPVGRDCPK
CHHYLVNKKK GKSSQVVCSN CDYEEEVQK
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