| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0688 |
|---|
| Symbol | potC |
|---|
| ID | 3241057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | + |
|---|
| Start bp | 683610 |
|---|
| End bp | 684422 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 637167348 |
|---|
| Product | spermidine/putrescine ABC transporter, permease protein PotC |
|---|
| Protein accession | YP_188272 |
|---|
| Protein GI | 57866621 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAATGGT ACGGAAAATT ATATATAGCT CTATTAATAA GTGTGCTTTA TATTCCCATT
TTCTTTTTAA TGATTTATTC TTTTAATTCT GCGGGTAATA TGAGTCACTT CGAACATTTT
ACTTTAGAAC ATTACCACTC CCTTTTTCAT AATGATCGGT TGATGTCGGT GATTTTTAAT
ACAGTTGCAG TGGCACTTTT ATCTGCATCG ATTGCTACAG TTATAGGTAC ATTTGGTGCG
ATCGCTTTAT ATTACTTACG CAACAAACGG TTTAAGGTTA CGCTATTAAC GATGAATAAT
GTATTAATGG TATCTTCAGA CGTAGTCATT GGTGCTTCTT TTTTAATTAT GTTCACTGCA
ATAGGACATT TCACAGGTTT AGGTTTAGGA TTTTCAACAG TGCTAGCATC TCATATAGCG
TTCTGTATTC CAATTGTTGT TATCATCGTC TTACCCCAAT TATATGAAAT GAATGATAAC
ATGTTAAATG CAGCAAGAGA TTTAGGTGCT AATGAATCAC AATTATTAAC TAGCATTATT
ATACCTAATA TTATGCCCTC GATTATAGGA GGATTCTTTA TGGCATTAAC ATATTCTCTA
GATGATTTTA CGGTAAGCTT CTTTGTTACT GGAAACGGAT TTAGTGTATT GTCTGTAGAA
GTTTATGCTA TGGCTCGAAA AGGTATAAGT ATGGAGATTA ATGCCATTTC TACAATAATA
TTTATTGCTA TTATGTTTGG AGTATTTGGA TATTACTTTA TTCAACATAT CGTTAATCGT
CAGAAAAAGA TGAAGCGAGG TGTTAATGAA TGA
|
|---|
| Protein sequence | MKWYGKLYIA LLISVLYIPI FFLMIYSFNS AGNMSHFEHF TLEHYHSLFH NDRLMSVIFN
TVAVALLSAS IATVIGTFGA IALYYLRNKR FKVTLLTMNN VLMVSSDVVI GASFLIMFTA
IGHFTGLGLG FSTVLASHIA FCIPIVVIIV LPQLYEMNDN MLNAARDLGA NESQLLTSII
IPNIMPSIIG GFFMALTYSL DDFTVSFFVT GNGFSVLSVE VYAMARKGIS MEINAISTII
FIAIMFGVFG YYFIQHIVNR QKKMKRGVNE
|
|---|
| |