| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0573 |
|---|
| Symbol | oppF |
|---|
| ID | 3241355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | + |
|---|
| Start bp | 566466 |
|---|
| End bp | 567404 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637167238 |
|---|
| Product | oligopeptide ABC transporter, ATP-binding protein OppF |
|---|
| Protein accession | YP_188164 |
|---|
| Protein GI | 57866529 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.481261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATG AAAATGTATT ATTACAAGTT AAAAATTTAA AACAGTATTT TAATCAAGGT
AAACATAATG AAGTTAAAGC GATTGATAAT ATAAGTTTTG ATGTTTATAA AGGGGAAACT
TTAGGCCTAG TAGGAGAGTC TGGATGTGGT AAATCAACGA CTGGAAAAGC CATTATCAAA
TTAAATGATA TTACTGATGG CGCAATCGAG TATGATGGTA AAGATATTCA TCAAATTAGA
AAACGTAAAG AGCGATTGAA GTTTAATAAG AAAATTCAAA TGATATTTCA AGATCCTTAT
GCATCTCTAA ATCCTCGGTT AAAGGTAATG GATATCGTAG CTGAAGGAAT AGATATTCAC
AAACTTGCTA GTAGTCAGCG TGATCGAAAG AAACGTGTAT ACGACCTTTT AGAAACAGTT
GGTTTAGGTA AAGAACACGC GAATCGTTAC CCACATGAGT TTTCAGGCGG ACAAAGACAA
CGTATTGGTA TCGCACGTGC ATTAGCTGTA GAGCCAGAAT TTATTATTGC AGATGAACCG
ATATCAGCAT TAGATGTATC GATTCAAGCT CAAGTCGTTA ATCTTTTATT AAAGCTACAA
CGTGAACGTG ATATTACTTT ATTGTTTATT GCTCATGATT TATCAATGGT GAAATATATT
TCCGATAGAA TTGCAGTGAT GCACTTCGGT AAAATTGTAG AAATTGGACC GGCTGATGAT
ATTTATAATT ATCCATTACA TGATTATACT AAGTCATTAT TAAGTGCCAT TCCACAGCCT
GATCCTGATG TTGAGAGAAA TCGTCAACGT GTTTTATATC ATGAAGATGC AACGCTTAAT
GAAGAACGTC AATTAAATGA AATTAGACCA CAACATTATG TATTTTCTAC TCAAAACGAA
GCAGTTAAAT TGAAACAAAA GTATGGTTTG TCTGTTTAA
|
|---|
| Protein sequence | MSNENVLLQV KNLKQYFNQG KHNEVKAIDN ISFDVYKGET LGLVGESGCG KSTTGKAIIK
LNDITDGAIE YDGKDIHQIR KRKERLKFNK KIQMIFQDPY ASLNPRLKVM DIVAEGIDIH
KLASSQRDRK KRVYDLLETV GLGKEHANRY PHEFSGGQRQ RIGIARALAV EPEFIIADEP
ISALDVSIQA QVVNLLLKLQ RERDITLLFI AHDLSMVKYI SDRIAVMHFG KIVEIGPADD
IYNYPLHDYT KSLLSAIPQP DPDVERNRQR VLYHEDATLN EERQLNEIRP QHYVFSTQNE
AVKLKQKYGL SV
|
|---|
| |