Gene SERP0545 details

Gene Information

• Locus tag: SERP0545
• Symbol: rocD
• ID: 3242608
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Staphylococcus epidermidis RP62A
• Kingdom: Bacteria
• Replicon accession: NC_002976
• Strand: +
• Start bp: 529033
• End bp: 530223
• Gene Length: 1191 bp
• Protein Length: 396 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 637167210
• Product: ornithine--oxo-acid transaminase
• Protein accession: YP_188136
• Protein GI: 57866470
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4992] Ornithine/acetylornithine aminotransferase
• TIGRFAM ID: [TIGR01885] ornithine aminotransferase

Plasmid Coverage information

• Num covering plasmid clones: 39
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTCAAT CTGAAAAAAT TATTAACTTA ACAAATCACT ATGGGGCGCA TAACTACGTT 
CCACTTCCAA TTGTTATTTC TGAAGCAGAG GGTGTATGGG TGAAAGATCC GGAAGGTAAC 
ACGTATATGG ATATGCTTTC GGCCTACTCG GCAGTGAATC AAGGTCATCG ACACCCAAGA 
ATTATTCAAG CATTGAAAGA TCAAGCAGAT AAAGTCACTT TAGTATCACG TGCTTTTCAT 
AGTGATAATT TGGGTCAATG GTATGAGAAA ATATGTAAAC TCGCAGGTAA AGACAAAGCA 
TTGCCTATGA ATACGGGAGC AGAGGCGGTT GAAACAGCTT TAAAAGCTGC TCGTCGTTGG 
GCTTATGATG TTAAGGGTAT TGAGCCGAAC AAAGCTGAAA TTATCGCTTT TAATGGTAAT 
TTCCATGGAC GTACGATGGC ACCAGTATCA TTGTCTTCAG AAGCTGAGTA TCAACGAGGC 
TATGGTCCAT TGTTAGATGG CTTTCGAAAA GTTGAGTTTG GTGACGTTAA TCAATTAAAA 
GCAGCAATTA ATAAAAATAC AGCAGCAATT TTAGTAGAAC CTATACAGGG AGAAGCAGGG 
ATTAACGTAC CACCAGAAGG ATATTTGAAA ACAATTAGAG AATTATGTGA TGAACATCAA 
ATTTTATTTA TTGCTGATGA AATTCAAGCA GGATTAGGAC GTTCAGGAAA ATTATTTGCA 
ACGGATTGGG ATCATGTAAA ACCGGATGTT TATATTTTAG GAAAAGCGTT AGGTGGAGGG 
GTATTTCCTA TCTCGGTAGT TCTTGCAGAT AATGAGGTAT TAGATGTATT TACTCCTGGC 
TCACATGGTT CTACATTTGG TGGAAATCCA CTAGCGAGTG CAGTTTCTAT TGCAGCTATA 
GATGTCATTA TTGACGAGGA TTTACCTGGT CGTTCATTAG AATTAGGAGA ATATTTTAAG 
TCTGAATTGA AAAAAATTGA GCATCCATCT ATTAAAGAAG TTAGGGGACG AGGATTATTT 
ATCGGTATTG AATTACATGA AAGTGCCAGA CCATATTGTG AAGCTTTGAA AGAACAAGGA 
TTATTATGTA AAGAAACTCA CGACACCGTT ATTAGATTTG CACCTCCATT AGTGATAACG 
AAAGAAGAGT TAGACATGGC TTTAGAGAAG ATTAAGAGTG TATTTGCATA G 

 

Protein sequence

MTQSEKIINL TNHYGAHNYV PLPIVISEAE GVWVKDPEGN TYMDMLSAYS AVNQGHRHPR 
IIQALKDQAD KVTLVSRAFH SDNLGQWYEK ICKLAGKDKA LPMNTGAEAV ETALKAARRW 
AYDVKGIEPN KAEIIAFNGN FHGRTMAPVS LSSEAEYQRG YGPLLDGFRK VEFGDVNQLK 
AAINKNTAAI LVEPIQGEAG INVPPEGYLK TIRELCDEHQ ILFIADEIQA GLGRSGKLFA 
TDWDHVKPDV YILGKALGGG VFPISVVLAD NEVLDVFTPG SHGSTFGGNP LASAVSIAAI 
DVIIDEDLPG RSLELGEYFK SELKKIEHPS IKEVRGRGLF IGIELHESAR PYCEALKEQG 
LLCKETHDTV IRFAPPLVIT KEELDMALEK IKSVFA