| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0450 |
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| Symbol | |
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| ID | 3241759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Staphylococcus epidermidis RP62A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002976 |
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| Strand | + |
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| Start bp | 454724 |
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| End bp | 457102 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637167117 |
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| Product | VacB/RNase II family exoribonuclease |
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| Protein accession | YP_188043 |
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| Protein GI | 57866444 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTAA AGCAATCCAT CGAAGAAATG ATAAAACAAC CTGACTATGA ACCCATGTCA
GTATCTGACT TTCAAGATGC GTTAGGTTTA AACAGTGCCG ACTCATTTAG AGATTTAATT
AAAATACTCG TTGAATTAGA ACAGTCTGGT TTAATTGAAC GTACAAGAAC AGACAGATAT
CAACGTAAAC AATCCAACAA AACAAATTCA AAACTAATCA AAGGAACGTT AAGTCAAAAT
AAAAAAGGCT TTGCTTTCTT AAGACCTGAA GATGACGAGA TGGATGATAT TTTTATTCCA
CCAACTAAAA TCAATAGAGC ATTAGATGGA GATACTGTCA TCGTGGAAAT TCAAAAATCT
CGTGGAGAAC ATAAAGGTAA AATTGAAGGT GAAGTAAAAT CTATTGAAAA GCATTCAGTT
ACACAAGTTG TTGGAACGTA TAGCGAAGCA AAGCATTTTG GTTTCGTATT ACCGGATGAC
AAACGTATTA TGCAAGATAT CTTTATACCT AAAGGACAAA ATTTAGGTGC TGTAGATGGT
CATAAAGTAT TAGTACAAAT TACGAAGTAT GCCGATAGTA CTGACAATCC AGAAGGCCAC
GTCTCAGCAA TATTAGGTCA TAAAAATGAT CCAGGTGTAG ATATACTTTC CATCATTTAC
CAGCATGGAA TAGAAATCGA GTTTCCAGAT GATGTATTAC AAGAAGCTGA AGAAGTACCG
GATGTAATAG AACCATCTGA AATCGAAGGG CGTCGTGATT TAAGAGATGA ATTAACAATC
ACTATAGATG GCGCAGATGC TAAAGATTTA GATGATGCCA TTGCTGTAAA AAAATTAAAA
AATGGCAACA CCGAGCTTAC AGTTAGTATT GCAGATGTAA GTTACTATGT AAAAGAAGGA
TCAGCTTTAG ATAAAGAAGC TTATGATCGT GCGACAAGTG TGTATCTTGT CGATCGAGTA
ATCCCGATGA TTCCACACCG TCTAAGTAAT GGAATATGCT CATTAAATCC AGAAGAAGAT
CGTTTAACAT TAAGTTGTCG AATGGAAATA AATGAACGAG GCGAAGTTGT AAAACATGAA
ATCTTTGATA GTGTAATACA TTCAAACTAC AGAATGACAT ATGATGCAGT TAACAAAATT
ATCACTGATC AAGATTCTGA AATACGTTCA CAATATAAAG ATTTAACACC TATGTTAGAT
TTAGCGCAAG ATTTATCAAA TAGATTAATT CATATGCGCA AACGTCGTGG AGAAATTGAT
TTTGATATTA ATGAAGCGAA AGTACTTGTG AATGACGAAG GTATTCCAAC AGAAGTGCTA
ATGAGAGAAC GTGGCGAAGG AGAACGTTTA ATTGAATCAT TCATGTTAGC AGCCAATGAA
ACAGTAGCTG AACACTTCAA TAAATTGGAA GTACCATTTA TTTATCGTGT TCATGAACAA
CCAAAATCTG ACCGATTAAG ACAGTTCTTC GACTTTATTA CCAATTTCGG TATTATGATA
AAAGGTACAG GTGAAGATAT TCATCCAACA ACATTACAAA GCATTCAAGA AGAAGTTGAA
GGTAGACCAG AACAAATGGT TATTTCAACG ATGATGTTAC GTTCTATGCA ACAAGCACAT
TATGATGATG TTAATTTAGG ACATTTTGGT TTGTCTGCTG AGTACTATAC TCACTTTACG
TCTCCAATAC GCCGTTATCC TGATTTAACA GTGCATAGAT TAATTCGTAA ATATTTAATA
GAGAATTCTA TGGATAAAAA AGAAATACGT CATTGGGAAG AGACGTTGCC AGAATTAGCT
GAGCACACAT CACAACGTGA ACGCCGTGCC ATTGAAGCCG AACGTGATAC TGATGAATTG
AAAAAAGCTG AGTATATGAT TCAACATATT GGTGATGAAT TTGAAGGTAT CATTAGCTCG
GTTGCTAATT TTGGTATGTT TATAGAATTA CCTAATACTA TTGAGGGTAT GGTTCATATC
GCTAATATGA CAGACGATTA TTATCATTTT GATGAACGAC AAATGGCACT AATCGGTGAA
CGTCAAGCAA AGGTCTTTCG CATTGGTGAT ACGGTCAAAG TTAAAGTGAC ACATGTTGAT
GTGGAAGAAC GCATGATAGA TTTCCAAATT GTTGGCATGC CATTACCTAA AAAGACATCA
TCACAACGAC CTGCTCGTGA GAAAACCATT CAAGCTAAAA CACGTGGCAA GTCGTTAGAC
CACACTAAAA GTGATCGTAA TGGTAAAGGT AAAAAGAAAA AACGTAAGCA ACGTAAAGGT
AAAAATGCAC GTAAAAAAGA TAAACAAGGT AATACGCATC ACAAACCTTT TTATAAAGAT
AAAAGTGTGA AGAAGAAATC GCGTCGAAAG AAAAAATAG
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| Protein sequence | MNLKQSIEEM IKQPDYEPMS VSDFQDALGL NSADSFRDLI KILVELEQSG LIERTRTDRY
QRKQSNKTNS KLIKGTLSQN KKGFAFLRPE DDEMDDIFIP PTKINRALDG DTVIVEIQKS
RGEHKGKIEG EVKSIEKHSV TQVVGTYSEA KHFGFVLPDD KRIMQDIFIP KGQNLGAVDG
HKVLVQITKY ADSTDNPEGH VSAILGHKND PGVDILSIIY QHGIEIEFPD DVLQEAEEVP
DVIEPSEIEG RRDLRDELTI TIDGADAKDL DDAIAVKKLK NGNTELTVSI ADVSYYVKEG
SALDKEAYDR ATSVYLVDRV IPMIPHRLSN GICSLNPEED RLTLSCRMEI NERGEVVKHE
IFDSVIHSNY RMTYDAVNKI ITDQDSEIRS QYKDLTPMLD LAQDLSNRLI HMRKRRGEID
FDINEAKVLV NDEGIPTEVL MRERGEGERL IESFMLAANE TVAEHFNKLE VPFIYRVHEQ
PKSDRLRQFF DFITNFGIMI KGTGEDIHPT TLQSIQEEVE GRPEQMVIST MMLRSMQQAH
YDDVNLGHFG LSAEYYTHFT SPIRRYPDLT VHRLIRKYLI ENSMDKKEIR HWEETLPELA
EHTSQRERRA IEAERDTDEL KKAEYMIQHI GDEFEGIISS VANFGMFIEL PNTIEGMVHI
ANMTDDYYHF DERQMALIGE RQAKVFRIGD TVKVKVTHVD VEERMIDFQI VGMPLPKKTS
SQRPAREKTI QAKTRGKSLD HTKSDRNGKG KKKKRKQRKG KNARKKDKQG NTHHKPFYKD
KSVKKKSRRK KK
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