| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0397 |
|---|
| Symbol | nrdE |
|---|
| ID | 3241159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | + |
|---|
| Start bp | 398490 |
|---|
| End bp | 400595 |
|---|
| Gene Length | 2106 bp |
|---|
| Protein Length | 701 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 637167063 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit alpha |
|---|
| Protein accession | YP_187990 |
|---|
| Protein GI | 57866331 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCA TGGAAGAAAA GAAATACAAT CATATTGAAT TAAATAATGA AGTGACCAAG
AGAAAAGACA ATGGTTTCTT TGATTTAGAG AAAGATCAAG AAGCATTGAA AGTGTATCTT
GAAGAAATCC ATGATAAAAT GATTTCTTTT GATGATGAAA TCGAAAGACT TCATTATCTT
GTTGATAATA ATTTTTATTT TAATGTTTTC GAAAAATATA GCGAAGCAGA ATTAATTGAA
ATTACTGAAT ACGCAAAATC AATTCACTTC CAATTTGCTA GTTATATGTC GGCAAGTAAG
TTTTATAAGG ATTACGCTTT AAAAACGAAT GATAAAACTA AGTTTCTTGA GGATTATAAT
CAGCACGTCG CAATCGTTGC ACTTTATTTA GCGAATGGTA ATGTTAAACA AGCAAAACAA
TTTATTTCTG CAATGGTGGA ACAACGTTAT CAACCGGCGA CACCAACATT CTTGAATGCA
GGTAGAGCAA GACGTGGAGA ACTTGTTTCA TGTTTCTTAT TAGAAGTAGA CGATAGCTTA
AATTCTATCA ATTTCATTGA TTCAACTGCA AAACAACTTA GTAAAATTGG TGGTGGTGTG
GCCATTAATT TATCGAAACT TCGTGCACGT GGAGAAGCAA TTAAAGGAAT TAAAGGTGTA
GCTAAAGGTG TTTTACCTGT TGCTAAGGCA CTTGAAGGTG GATTTAGTTA TGCAGATCAA
TTAGGACAAC GTCCTGGCGC TGGGGCAGTG TACTTAAATA TTTTCCATTA CGATGTTGAA
GAGTTTTTAG ATACTAAGAA AGTGAATGCA GATGAAGATT TACGTTTATC TACTATTTCG
ACTGGTCTTA TTGTACCTTC TAAATTCTTT GATTTGGCTA AAGAGGGTAA AGATTTCTAT
ATGTTTGCAC CTCATACAGT TAAACAAGAA TACGGTGTGA CTTTAGATGA TATTGATTTA
GAAAAGTATT ACGACGATAT GGTTGCAAAC CCTAATATCG ATAAAAAGAA AAAAGACGCA
CGTGAAATGT TAAATATGAT TGCACAAACA CAATTACAGT CTGGTTATCC ATATCTTATG
TTTAAAGATA ATGCAAACAA AGTACATGCG AATTCAAATA TTGGGCAAAT TAAAATGAGT
AATTTATGTA CTGAAATTTT CCAATTACAA GAGACATCAG TAATTAACGA CTATGGAATT
GAAGATGAAA TTAAAAGAGA TATTTCATGT AACTTAGGCT CATTGAATAT AGTGAATGTT
ATGGAATCAG GTAAATTCAG AGATTCTGTG TTCACAGGTA TGGATGCTCT TACAGTTGTA
AGTGATGAAG CAAATATTCA AAATGCACCA GGTGTAAAAA AAGCGAATAG TGAACTACAT
TCTGTTGGAC TAGGAGTAAT GAACTTACAT GGTTATCTAG CTAAAAATAA AATTGGCTAT
GAATCTGAAG AAGCAAAAGA CTTTGCTAAT ATATTCTTTA TGATTATGAA CTATTATTCC
ATCGAACGTT CAATGGAAAT TGCAAAAGAG CGTGGAGAAA AGTATCAAGA CTTTGAGCAA
TCAGACTATG CAAATGGTAA ATATTTTGAA TTCTATACAT CTCAAGAATT TGAACCAAAA
TTTGAAAAGG TTCGCCAACT TTTTGATGGT ATCGATATAC CTACTTCAAA TGATTGGAAA
GAATTGCAAA ATAAAGTAGA ACAATATGGA CTTTATCACG CTTATAGATT AGCTATTGCT
CCGACTCAAA GTATTTCTTA TGTTCAAAAT GCGACAAGTT CTGTTATGCC TATTGTTGAC
CAAATTGAAC GTCGTACGTA TGGAAATGCG GAAACATTTT ATCCAATGCC ATTTTTATCA
CCAGAAACAA TGTGGTACTA CAAATCAGCA TTTAATACTG ACCAAATGAA ACTTATTGAC
TTAGTAGCTA CAATTCAAAC TCACGTAGAC CAAGGTATTT CAACGATACT TTATGTTAAT
TCAGAAATTT CAACACGTGA ACTTTCAAGA TTATATGTAT ATGCACACCA TAAAGGCCTT
AAATCTTTAT ACTATACACG TAATAAATTA TTAAGTGTGG AAGAATGTAC AAGTTGTGCG
ATTTAA
|
|---|
| Protein sequence | MKTMEEKKYN HIELNNEVTK RKDNGFFDLE KDQEALKVYL EEIHDKMISF DDEIERLHYL
VDNNFYFNVF EKYSEAELIE ITEYAKSIHF QFASYMSASK FYKDYALKTN DKTKFLEDYN
QHVAIVALYL ANGNVKQAKQ FISAMVEQRY QPATPTFLNA GRARRGELVS CFLLEVDDSL
NSINFIDSTA KQLSKIGGGV AINLSKLRAR GEAIKGIKGV AKGVLPVAKA LEGGFSYADQ
LGQRPGAGAV YLNIFHYDVE EFLDTKKVNA DEDLRLSTIS TGLIVPSKFF DLAKEGKDFY
MFAPHTVKQE YGVTLDDIDL EKYYDDMVAN PNIDKKKKDA REMLNMIAQT QLQSGYPYLM
FKDNANKVHA NSNIGQIKMS NLCTEIFQLQ ETSVINDYGI EDEIKRDISC NLGSLNIVNV
MESGKFRDSV FTGMDALTVV SDEANIQNAP GVKKANSELH SVGLGVMNLH GYLAKNKIGY
ESEEAKDFAN IFFMIMNYYS IERSMEIAKE RGEKYQDFEQ SDYANGKYFE FYTSQEFEPK
FEKVRQLFDG IDIPTSNDWK ELQNKVEQYG LYHAYRLAIA PTQSISYVQN ATSSVMPIVD
QIERRTYGNA ETFYPMPFLS PETMWYYKSA FNTDQMKLID LVATIQTHVD QGISTILYVN
SEISTRELSR LYVYAHHKGL KSLYYTRNKL LSVEECTSCA I
|
|---|
| |