| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0318 |
|---|
| Symbol | |
|---|
| ID | 3241289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 322334 |
|---|
| End bp | 323134 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637166987 |
|---|
| Product | LysM domain-containing protein |
|---|
| Protein accession | YP_187914 |
|---|
| Protein GI | 57866234 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3942] Surface antigen |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.460625 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAAAGT TAGCCTTTGC AATTACAGCC GCTTCAGGCG CAGCAGCAGT TCTATCACAT
CATGATGCTG AAGCTTCTAC ACAACATAAG GTTCAATCTG GAGAATCCTT ATGGACTATT
GCACAACAAT ACAATACTTC AGTAGAAAGC ATTAAGCAGA ATAATAATCT TAGCAACAAT
ATGGTATTCC CAGGACAAGT TATTAATGTA GGTGGAAGTG CTTCACAAAA TACTAGTTCA
AACACTTCTT CAAGTTCAGC ATCTTCACAT ACTGTAGTAG CAGGTGAATC ATTAAACATC
ATAGCTAATA AATATGGTGT TTCAGTTGAT GCATTAATGC AAGCAAATCA TCTAAATGGT
TATTTAATTA TGCCTAACCA AATATTAACT ATCCCTAATG GTGGTTCTGG TTCAGGATCA
GGTGGTACAG CAACTCAAAC TAGCGGTAAT TATACTTCAC CTTCATTCAA CCATCAAAAC
TTATACACTG AAGGTCAATG CACATGGTAT GTGTTCGACA AACGTTCACA AGCTGGTAAA
CCTATCAGTA CTTACTGGTC TGATGCAAAA TACTGGGCGT CAAATGCAGC GAATGATGGT
TATCAAGTTG ATAATACTCC ATCTGTTGGT GCAATTATGC AAAGTACACC TGGACCATAT
GGTCATGTAG CATACGTTGA ACGTATTAAT GGTGATGGTA GTATTTTAAT TTCAGAAATG
AATTATGCAA ATGGTCCATA CAATATGAAC TATCGTACTA TCCCAGCTTC AGAAGTATCT
TCATATGCAT TTATCCACTA A
|
|---|
| Protein sequence | MKKLAFAITA ASGAAAVLSH HDAEASTQHK VQSGESLWTI AQQYNTSVES IKQNNNLSNN
MVFPGQVINV GGSASQNTSS NTSSSSASSH TVVAGESLNI IANKYGVSVD ALMQANHLNG
YLIMPNQILT IPNGGSGSGS GGTATQTSGN YTSPSFNHQN LYTEGQCTWY VFDKRSQAGK
PISTYWSDAK YWASNAANDG YQVDNTPSVG AIMQSTPGPY GHVAYVERIN GDGSILISEM
NYANGPYNMN YRTIPASEVS SYAFIH
|
|---|
| |