| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0156 |
|---|
| Symbol | lysS |
|---|
| ID | 3241010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | + |
|---|
| Start bp | 147452 |
|---|
| End bp | 148939 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 637166809 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_187752 |
|---|
| Protein GI | 57866087 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.033113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAG AAATGAACGA CCAAATGCAA GTTCGTCGTC AAAAATTACA AGAATTAATT
GATTTAGGGA TTGATCCTTT TGGTCATCGA TTCAATCGCT CATCTACTTC AAGTGAGTTA
AAAGAACAGT GGGACCAATT CTCTAAGGAA GAATTGCATG AAAAAGAAGA CGAAAGCCAC
GTGTCAATTG CAGGTCGTCT TATGACTAAA CGTGGTAAAG GTAAAGCGGG ATTTGCACAT
ATTCAAGACT TGAAAGGTCA GATTCAAATT TATGTAAGAA AAGATCAAGT TGGAGATGAT
CAATTTAACA TTTGGAAAAT GGCTGACTTA GGTGACATCA TAGGTGTTGA AGGTGTCATG
TTTAAAACTA ATACGGGCGA GATTTCTGTC AAAGCTAAGT CATTTACTTT ACTATCCAAA
TCATTACGAC CTTTACCTGA TAAGTTCCAT GGTTTACAAG ATATAGAACA AAGATATCGA
CAACGTTATT TAGATTTAAT TACAAATGAA GATAGTACGC AAACGTTTAT TAATCGTAGT
AAAATAATTC AAGAAATGAG AAACTATTTA AATAAACAAG GATTCTTGGA AGTAGAAACA
CCAATGATGC ACCAAATTGC TGGAGGTGCT GCTGCACGTC CGTTTGTTAC GCATCATAAC
GCATTAGATG CTACTCTTTA TATGCGTATA GCTATAGAAC TACATTTGAA ACGGTTAATT
GTCGGAGGTC TTGAAAAAGT CTACGAGATA GGCAGAGTTT TTCGTAATGA AGGTGTATCT
ACAAGACATA ACCCTGAATT TACAATGATT GAATTGTATG AAGCTTATGC TGATTATCAT
GATATAATGG ATTTAACTGA AAATATGGTC AGACACATTG CTCAAGAAGT GTTTGGATCA
GCTAAAGTAC AATATAATGA TGAAGAAATT GACTTAGAAT CTTCATGGAA ACGACTTCAC
ATTGTTGATG CTGTTAAAGA AGTTACCGGT GTAGATTTTT ATAATGTTAA TTCTGATGAA
GAAGCTATTA GATTAGCAAA AGAACATGAT ATTGAAATTA CTGAAAATAT GAAATATGGC
CATATATTAA ATGAATTTTT TGAACAGAAA GTTGAAGAAA CACTTATTCA ACCAACGTTT
ATTTATGGTC ACCCTATTGA AATTTCACCG TTAGCAAAGA AAAATCCAAA CGATGAAAGA
TTTACTGATC GTTTTGAATT ATTTATTGTA GGAAGAGAGC ATGCAAATGC CTTCACGGAA
TTAAACGATC CGATTGATCA ACGCCAACGT TTTGAAGCGC AGCTTGTTGA AAAAGAACAA
GGAAATGATG AAGCTCATGA TATGGATGAG GATTACATCG AAGCATTAGA GTATGGAATG
CCTCCAACTG GTGGTCTAGG TATCGGTATC GACAGATTAG TAATGCTATT AACTGATTCT
CCGTCAATTA GAGACGTATT ACTATTCCCA TACATGAGAC AAAAATAG
|
|---|
| Protein sequence | MSEEMNDQMQ VRRQKLQELI DLGIDPFGHR FNRSSTSSEL KEQWDQFSKE ELHEKEDESH
VSIAGRLMTK RGKGKAGFAH IQDLKGQIQI YVRKDQVGDD QFNIWKMADL GDIIGVEGVM
FKTNTGEISV KAKSFTLLSK SLRPLPDKFH GLQDIEQRYR QRYLDLITNE DSTQTFINRS
KIIQEMRNYL NKQGFLEVET PMMHQIAGGA AARPFVTHHN ALDATLYMRI AIELHLKRLI
VGGLEKVYEI GRVFRNEGVS TRHNPEFTMI ELYEAYADYH DIMDLTENMV RHIAQEVFGS
AKVQYNDEEI DLESSWKRLH IVDAVKEVTG VDFYNVNSDE EAIRLAKEHD IEITENMKYG
HILNEFFEQK VEETLIQPTF IYGHPIEISP LAKKNPNDER FTDRFELFIV GREHANAFTE
LNDPIDQRQR FEAQLVEKEQ GNDEAHDMDE DYIEALEYGM PPTGGLGIGI DRLVMLLTDS
PSIRDVLLFP YMRQK
|
|---|
| |