| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0141 |
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| Symbol | mfd |
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| ID | 3242423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Staphylococcus epidermidis RP62A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002976 |
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| Strand | + |
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| Start bp | 130875 |
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| End bp | 134384 |
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| Gene Length | 3510 bp |
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| Protein Length | 1169 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 637166794 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_187737 |
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| Protein GI | 57866056 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAATCAA TGATTGCAAA TTACATTAGC GAAGATAATC GTTTTCAAGA ATTAGATGAA
GTCTTCGGCC AAGAGAATAT TTTAGTTACG GGATTATCCC CGTCAGCGAA GGCAACAATT
ATTGCTGAAA AATATTTAAA AGATCATAAA CAAATGCTAC TCGTAACTAA TAATTTATAC
CAAGCAGATA AAATCGAAAC TGACATTTTA CAATATGTAG ATGACTCAGA AGTTTATAAA
TATCCTGTTC AAGATATAAT GACTGAAGAG TTTTCTACTC AAAGTCCACA ATTGATGAGT
GAGCGTGTTA GAACGTTGAC TGCGTTAGCC CAAGGCGAAA AAGGGTTATT TATTGTGCCT
TTAAACGGCT TTAAAAAATG GCTAACACCG GTTGATTTAT GGAAAGATCA TCAAATGACG
CTTAAAGTAG GTCAGGATAT TGATGTTGAT GCATTCTTAA ATAAATTAGT TAATATGGGT
TATCGCCGAG AAAGTGTAGT GTCACATATT GGTGAGTTTT CATTGCGTGG TGGAATCATA
GATATATATC CGTTGATAGG AACACCTGTG AGAATAGAGC TATTTGATAC TGAAGTTGAT
TCCATCAGAG ACTTTGATGT AGAAACACAA CGTTCTAACG ATAATATAAA TCAAGTTGAA
ATCACAACAG CTAGTGACTA CATTATTACT GATGAAGTGA TACAACACTT ACAAAATGAA
CTTAAAAAAG CATATGAATA TACACGCCCT AAAATTGAAA AGTCCGTACG TAATGATTTA
AAAGAGACAT ATGAAAGTTT TAAGTTGTTT GAATCTACCT TTTTCGATCA TCAATTGTTA
CGACGTCTTG TTTCATTTAT GTATGAAAAA CCATCAACCC TTATTGACTA TTTTCAAAAA
AACGCGATTA TTGTAGTTGA TGAGTTTAAT CGTATTAAGG AAACAGAAGA AACACTTACA
ACAGAAGTTG AAGATTTTAT GAGTAACTTA ATTGAGAGTG GAAATGGATT TATCGGACAA
GGATTTATGA AGTATGAAAG TTTTGACGCA TTATTAGAGC AACATGCCGT TGCATATTTC
ACATTATTTA CATCTTCGAT GCAAGTACCA TTACAACATA TTATTAAGTT CTCTTGTAAA
CCAGTTCAAC AATTTTATGG TCAATATGAC ATTATGCGCT CGGAATTTCA AAGATACGTG
CATCAAGATT ACACTGTCGT AGTTCTTGTT GAAACTGAAA CAAAAGTTGA ACGTATTCAA
TCAATGCTTA ATGAAATGCA TATTCCAACA GTATCAAATA TTCACGAAGA TATTGATGGT
GGTCAAGTTG TAGTGACGGA AGGTAGTCTT TCTGAAGGCT TTGAATTACC TTATATGCAG
TTGGTAGTCA TCACAGAAAG AGAATTATTT AAAACAAGAC AAAAGAAACA ACGTAAACGT
ACAAAAACGA TTTCTAATGC TGAAAAAATA AAATCATATC AAGACCTAAA TGTGGGCGAT
TATATAGTGC ATGTGCATCA TGGTGTCGGA CGATACTTAG GTGTTGAAAC ACTAGAAGTT
GGAGATACAC ATCGCGACTA TATTAAATTG CAATATAAAG GAACTGATCA ATTATTCGTT
CCAGTTGATC AAATGGATCA AGTTCAAAAG TATGTGGCTT CTGAAGATAA GTCGCCTAGA
TTAAATAAAT TAGGCGGGAC AGAATGGAAA AAAACAAAGG CGAAAGTTCA ACAAAGTGTT
GAAGATATAG CTGATGAATT AATTGATTTG TATAAAGAAC GTGAAATGTC TGTAGGTTAT
CAATACGGCC AAGATACTGC AGAGCAATCA GCATTTGAGC ATGATTTTCC ATATGAATTA
ACACCCGATC AAAGTAAGTC AATCGATGAA ATTAAAGGTG ACATGGAAAG AGCAAGACCT
ATGGACCGTC TTCTTTGTGG TGATGTGGGA TATGGTAAAA CTGAAGTGGC TGTCCGTGCA
GCGTTTAAAG CTGTCATGGA TGGTAAGCAA GTTGCGTTTT TAGTACCAAC AACGATTCTT
GCACAACAAC ACTACGAAAC ACTACTTGAA CGTATGCAAG ATTTTCCGGT CGAAATTCAA
TTGGTAAGTC GATTCCGCAC AGCTAAAGAA ATAAGGGAAA CTAAAGAAGG GCTCAAATCA
GGATATGTTG ACATTGTCGT AGGTACACAT AAATTATTAG GTAAAGATAT TCAATATAAA
GATTTGGGAT TGCTTATTGT TGATGAAGAA CAACGTTTTG GAGTGCGACA TAAAGAACGC
ATTAAAACTT TGAAAAAAAA CGTTGATGTA CTGACGCTTA CTGCAACACC AATACCAAGA
ACATTGCATA TGAGTATGTT AGGTGTACGT GACTTATCAG TGATTGAAAC ACCACCTGAA
AATCGTTTTC CTGTACAAAC TTATGTCTTA GAACAGAATA CGAACTTTAT TAAAGAGGCA
TTAGAGCGTG AATTATCTCG CGATGGACAA GTATTTTATT TGTATAACAA AGTGCAGTCC
ATTTATGAAA AAAGAGAACA ACTTCAAAGG TTAATGCCTG ACGCTAACAT TGCTGTAGCA
CATGGCCAAA TGACTGAACG TGATTTAGAG GAAACAATGT TAAGCTTTAT TAATCACGAG
TACGATATTT TAGTAACGAC TACAATTATT GAAACAGGTG TAGATGTACC AAATGCTAAT
ACTTTAATCA TAGAAGAGGC TGATCGTTTT GGTTTAAGCC AGCTATACCA ATTAAGAGGA
CGTGTAGGAC GTTCAAGTAG AATTGGTTAC GCTTATTTCT TACATCCAGC TAACAAAGTG
TTAAATGAGA CTGCTGAAGA GCGATTGCAA GCTATTAAGG AGTTTACCGA ACTAGGTTCA
GGTTTTAAAA TCGCTATGCG AGATTTAAAT ATTCGTGGTG CAGGCAATTT ACTCGGTAAG
CAACAACATG GCTTTATTGA TTCGGTTGGT TTCGATTTAT ACTCTCAAAT GTTAGAAGAA
GCAGTAAACG AAAAACGTGG CATTAAAGAA GAATCGCCGG ATGCACCAGA TATTGAAGTA
GAATTGCACT TAGATGCTTA TTTACCAGCT GAATATATAC AAAGTGAACA GGCTAAAATT
GAGATTTATA AAAAACTTCG AAAAGTAGAA ACTGAAGAAC AACTTTTCGA TGTCAAAGAT
GAATTAATAG ATCGTTTTAA TGATTATCCA ATTGAAGTCG AACGATTATT AGATATTGTT
GAAATCAAAG TCCACGCTCT ACATGCGGGT GTCGAATTGA TAAAAGACAA AGGCAAATCT
ATACAAATCA TTTTATCACC TAAAGCGACT GAAGATATTA ATGGAGAAGA ATTGTTTAAA
CAGACGCAAC CTCTTGGTAG AGCAATGAAA GTTGGCGTGC AAAATAATGC AATGAATGTA
ACGCTAACAA AATCAAAACA ATGGTTAGAT AGTTTGAAAT TCTTAGTTAG ATGTATTGAA
GAAAGTATGG CGATTAAAGA TGAAGACTAA
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| Protein sequence | MKSMIANYIS EDNRFQELDE VFGQENILVT GLSPSAKATI IAEKYLKDHK QMLLVTNNLY
QADKIETDIL QYVDDSEVYK YPVQDIMTEE FSTQSPQLMS ERVRTLTALA QGEKGLFIVP
LNGFKKWLTP VDLWKDHQMT LKVGQDIDVD AFLNKLVNMG YRRESVVSHI GEFSLRGGII
DIYPLIGTPV RIELFDTEVD SIRDFDVETQ RSNDNINQVE ITTASDYIIT DEVIQHLQNE
LKKAYEYTRP KIEKSVRNDL KETYESFKLF ESTFFDHQLL RRLVSFMYEK PSTLIDYFQK
NAIIVVDEFN RIKETEETLT TEVEDFMSNL IESGNGFIGQ GFMKYESFDA LLEQHAVAYF
TLFTSSMQVP LQHIIKFSCK PVQQFYGQYD IMRSEFQRYV HQDYTVVVLV ETETKVERIQ
SMLNEMHIPT VSNIHEDIDG GQVVVTEGSL SEGFELPYMQ LVVITERELF KTRQKKQRKR
TKTISNAEKI KSYQDLNVGD YIVHVHHGVG RYLGVETLEV GDTHRDYIKL QYKGTDQLFV
PVDQMDQVQK YVASEDKSPR LNKLGGTEWK KTKAKVQQSV EDIADELIDL YKEREMSVGY
QYGQDTAEQS AFEHDFPYEL TPDQSKSIDE IKGDMERARP MDRLLCGDVG YGKTEVAVRA
AFKAVMDGKQ VAFLVPTTIL AQQHYETLLE RMQDFPVEIQ LVSRFRTAKE IRETKEGLKS
GYVDIVVGTH KLLGKDIQYK DLGLLIVDEE QRFGVRHKER IKTLKKNVDV LTLTATPIPR
TLHMSMLGVR DLSVIETPPE NRFPVQTYVL EQNTNFIKEA LERELSRDGQ VFYLYNKVQS
IYEKREQLQR LMPDANIAVA HGQMTERDLE ETMLSFINHE YDILVTTTII ETGVDVPNAN
TLIIEEADRF GLSQLYQLRG RVGRSSRIGY AYFLHPANKV LNETAEERLQ AIKEFTELGS
GFKIAMRDLN IRGAGNLLGK QQHGFIDSVG FDLYSQMLEE AVNEKRGIKE ESPDAPDIEV
ELHLDAYLPA EYIQSEQAKI EIYKKLRKVE TEEQLFDVKD ELIDRFNDYP IEVERLLDIV
EIKVHALHAG VELIKDKGKS IQIILSPKAT EDINGEELFK QTQPLGRAMK VGVQNNAMNV
TLTKSKQWLD SLKFLVRCIE ESMAIKDED
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