| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0100 |
|---|
| Symbol | |
|---|
| ID | 3241005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | + |
|---|
| Start bp | 84899 |
|---|
| End bp | 85873 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637166750 |
|---|
| Product | LysM domain-containing protein |
|---|
| Protein accession | YP_187697 |
|---|
| Protein GI | 57866082 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3942] Surface antigen |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.54299 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAAAAAA AATATATTAC TGCCATTATT GGAACAACTG CCCTTAGCGC ATTGGCATCA
ACTCATGCAC AAGCTGCAAC AACGCATACA GTAAAAAGTG GAGAATCTGT ATGGTCAATT
TCTCACAAAT ATGGGATTAG TATTGCTAAA TTAAAATCAC TTAATGGATT GACTTCCAAT
TTAATATTCC CTAATCAAGT ATTGAAAGTA TCAGGCTCAT CTTCAAGAGC AACGTCAACA
AATAGTGGCA CAGTTTATAC AGTTAAAGCT GGAGATTCAT TATCTTCTAT TGCTGCAAAA
TACGGTACAA CTTATCAAAA AATCATGCAA CTTAATGGGT TAAATAACTA TCTTATTTTC
CCTGGACAAA AGTTGAAAGT TTCTGGTAAA GCGACGAGTT CCAGTCGTGC AAAAGCTAGT
GGGTCTAGTG GTCGTACTGC AACATATACT GTTAAGTATG GAGACTCACT ATCTGCAATT
GCTAGTAAAT ATGGGACAAC GTATCAAAAA ATTATGCAAT TAAATGGATT AACTAATTTC
TTTATCTATC CTGGACAGAA GTTAAAAGTG CCTGGAGGTA GTTCTAGTAG CTCATCTTCT
AATAATACTA GATCAAACGG TGGCTATTAT TCACCAACTT TTAACCATCA AAACTTGTAT
ACTTGGGGAC AATGCACATG GCACGTATTT AATAGACGTG CTGAAATAGG AAAAGGTATC
AGTACATACT GGTGGAATGC AAATAATTGG GACAATGCAT CAGCTGCTGA TGGATATACT
ATTGATTATC GTCCTACAGT AGGCTCAATT GCACAAACTG ACGCTGGTTA CTATGGTCAC
GTAGCGTTTG TAGAGCGCGT GAATAGCGAT GGAAGTATTT TAGTTTCAGA AATGAACTGG
AGTGCAGCTC CTGGAAATAT GACATATAGA ACAATTCCAG CTTATCAAGT GAGAAATTAC
AAATTTATTC ATTAA
|
|---|
| Protein sequence | MQKKYITAII GTTALSALAS THAQAATTHT VKSGESVWSI SHKYGISIAK LKSLNGLTSN
LIFPNQVLKV SGSSSRATST NSGTVYTVKA GDSLSSIAAK YGTTYQKIMQ LNGLNNYLIF
PGQKLKVSGK ATSSSRAKAS GSSGRTATYT VKYGDSLSAI ASKYGTTYQK IMQLNGLTNF
FIYPGQKLKV PGGSSSSSSS NNTRSNGGYY SPTFNHQNLY TWGQCTWHVF NRRAEIGKGI
STYWWNANNW DNASAADGYT IDYRPTVGSI AQTDAGYYGH VAFVERVNSD GSILVSEMNW
SAAPGNMTYR TIPAYQVRNY KFIH
|
|---|
| |