Gene TDE2639 details

Gene Information

• Locus tag: TDE2639
• Symbol: pepF
• ID: 2740813
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 2678260
• End bp: 2680149
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637161535
• Product: oligoendopeptidase F
• Protein accession: NP_973237
• Protein GI: 42528139
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1164] Oligoendopeptidase F
• TIGRFAM ID: [TIGR00181] oligoendopeptidase F

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.306383
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGATTTA AGACTCTTGC CTATTTATCG GCATTGTTGT ATAGTAATGA TATGAAAAAC 
TCAACTACAC CTAAACGTTC CGAGATCGCC AAAAGCGACA AATGGAATAT CGAATTACTT 
TTTAAGAATG AAGAAGAATG GGAAGCAGCT CTTGCTTCTA TTCCGGAAGG CGGAAAAGAA 
ATCTTAAAAT ATAAAGAAGC TTTTTCCAAG CCTGAAACAA TCGATGCGGC AACCCTGCTT 
GCCTGCCTAA AGGCTTCAAC TGGGGTTGAT AGAATTGCGG AAAAGGTCGG AAACTATGCC 
TTTTTGCAAA AATCTTCAAA CGAGGGAGAT CCCGAAAACA TTAAACGGAT AAGTAAATAC 
ATGATGACCG TTACAGAGCT TTCGGCTGCC ACCAGCTGGC TCATGCCCGC CATCATGGAA 
ATCCCTGAAG AAAAAATCCG CTCATGGATT GATCCTTCAA GCCCCACAGG AAAGGACTTT 
GCCGATTTTA AGGTTTCCTT GGAAAAGACC TTGTACCTAA AACCCCATAC CCTTTCCGAC 
AAAGAAGAAA AGATTTTAAG CCTTTTAAGC GAGCCCCATG GTACACCTAG CCAAGCCTTT 
TCGGTTCTAA CCAACGTAGA CTTTGATTTC GGTACAATCA CCACAAAAGA AGGAGATATA 
AAACTAACTC AATCTTCTTA TTCAAAGTTT ATGCAAAATC CCGACAGAGC TTTGAGGGAA 
AAGGCCTATA AACAGCTTTA CGGCGTATAC GGTGCACATA AAAACACAAT TGCAAGTCTG 
TACACGGGAC AGGTTCAGCA AAATGTCGCC CTTGCAAAAA TACGGGGCTA TGCTTCTGCC 
AGAGAAAAAT CCCTCTATGT AGACAAGGTG CCTACAGCCG TTTATGACAA CCTCGTAGAT 
ACCATTCACA AGAATTTAAA ACCCTTGCAT AAATTCTACA GCATGTTAAA AAAACATTTA 
GGCCTAAAAG AACTCCGCCA CTATGATGTT TACATGCCCT TAGTCAGCGA AGTAAAAAAA 
ATTACCCCAT ATAACGAAGC CGTTGACATC ATCACCGAGG CCCTAAAACC TCTCGGAGAA 
GAATATGTTA AAACAATCCG AAACGGTCTT TTAAACGGCT GGGTAGATAA GTACGAAAAT 
GAAGGCAAAC GCTCAGGAGC CTTTTCTGCA GGCGGATATG ACAGCGATCC CTACATTCTT 
ATGAACTACA AAGAAGATGT TATCCGTGAT GTATTCACCC TTGTACACGA GGGCGGACAC 
TCCATGCATT CGTGGTATTC GGTAAGAAAC AATCCCTACC CCTGCTACCA CTACACAATC 
TTTGAAGCCG AAGTTGCCTC TACCTTTAAC GAGGAGCTTT TATTCAGGCA CATGCTTAAA 
ACAAGTACCG ACCCGAAAAT GAGAGCCTAT CTTTTGAGCG TTAGAGCTTC TGATATTCTT 
GCAACCCTCT ACAGACAAAC CATGTTTGCA GAGTACGAAA AAATTACTCA CGCCCTCGTC 
GAAAGCGGCA CACCTCTTAC GGTCGAAAAT TTAAGAAGCG AATACAGAAA ACTTTTGGAG 
CTCTATTTCG GTCCCGAAAT GGTGTTTGAA GATGTAAGCG ATTTGGAAGG AATGAGGATT 
CCGCACTTTT ACAGAGCCTT CTATGTTTAC AAATATTCAA CAGGTATTTC AGCCTCGATG 
GCTCTTGCCG AAAGAGTCTG CTCAGGCGGC GACAAAGAAA GAGAAGACTA CTTTAAGTTC 
TTAAAATCGG GAGGCTCACG CTATCCCATT GAATCCTTAA AACTTGCAGG TGTCGATATG 
GCAAGCCCGG CTCCGGTGCA GGCAGCATGC GATAACTTTG CAAAGATTGT AGACGAACTC 
GAAAAAGCTC TTGAAGAATT AAAAAAATAA 

 

Protein sequence

MGFKTLAYLS ALLYSNDMKN STTPKRSEIA KSDKWNIELL FKNEEEWEAA LASIPEGGKE 
ILKYKEAFSK PETIDAATLL ACLKASTGVD RIAEKVGNYA FLQKSSNEGD PENIKRISKY 
MMTVTELSAA TSWLMPAIME IPEEKIRSWI DPSSPTGKDF ADFKVSLEKT LYLKPHTLSD 
KEEKILSLLS EPHGTPSQAF SVLTNVDFDF GTITTKEGDI KLTQSSYSKF MQNPDRALRE 
KAYKQLYGVY GAHKNTIASL YTGQVQQNVA LAKIRGYASA REKSLYVDKV PTAVYDNLVD 
TIHKNLKPLH KFYSMLKKHL GLKELRHYDV YMPLVSEVKK ITPYNEAVDI ITEALKPLGE 
EYVKTIRNGL LNGWVDKYEN EGKRSGAFSA GGYDSDPYIL MNYKEDVIRD VFTLVHEGGH 
SMHSWYSVRN NPYPCYHYTI FEAEVASTFN EELLFRHMLK TSTDPKMRAY LLSVRASDIL 
ATLYRQTMFA EYEKITHALV ESGTPLTVEN LRSEYRKLLE LYFGPEMVFE DVSDLEGMRI 
PHFYRAFYVY KYSTGISASM ALAERVCSGG DKEREDYFKF LKSGGSRYPI ESLKLAGVDM 
ASPAPVQAAC DNFAKIVDEL EKALEELKK