| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2582 |
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| Symbol | |
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| ID | 2741286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 2611929 |
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| End bp | 2616224 |
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| Gene Length | 4296 bp |
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| Protein Length | 1431 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 637161475 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_973180 |
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| Protein GI | 42528082 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00148361 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTTT ATTATATTCC TAACCTGAAT AATATAGACG ACATTACCTT TATTCTGTAT
CTCATTAAAA GTTTATTTTT AAAAAATTCT TTAATTCAAA AAGATCATGA AAAAAAACTT
ACTAGCATTA TTGATGCTTT AAAATCTGAA ATAGAAATTA ATGAAGATAT ACAGCGAATA
AAAGCACTTA AATACAAGCT TATAAACTTA ATAACAGGTT TAATACTAGA AAATGCATTA
TCACAACCCA TAGTTTTTAT AATCGATGAT ATACATTTGA TAAGTGAATT CATAACAAAA
GCAATATTGT ACTTAACAAT AGAAAATTCC GATAAAAAAA ATATAATACT GATACAATCT
GCCAATGAAA GTCTTATTAA TAATAATCAA AATGCAAAAA CACTTATTAA AACCTTGTCA
AATCAAACTT CTATAAAAAA AATAAACCTC CAAAGCTTAT CTGAAGCAGA AACTGAAGCT
TTAATACGAA ATACGATAAA TATAAGAAAC ATCCCGGAGA TATTATTAAA AAAAATATAC
TCAAATACCA GCGGCAATCC CTTATTTATT AATGAAGCAC TAAAAGAACT TACTATTTCG
GGAGAGCTAA AAAAAGACAA GTCAATGGAG TTATGTAAGC TCTCCGATAG GTTATCTAAC
CCTTCTATTC CGATACCGAT ATCTACCAAT ATACAACAGT CTGTACGAAA GCAGATAAAA
AATCTGAATA AAGATGAATT ACATTTTTTA AAAGACCTAT GTATCTTCCA AACAAGTTTT
AAAGCTGAAT CTTTACCGAA AATGCTGAAT GTAACAGACT CTGACGTTAA AAAATATATA
CCAAAACTCT TAGAACAAAA TATCATAAAA AAAACAACAA AGCAGCATGC AAATGAGTAC
TCGATTATAA ATAAAATCTT ACAAAAAACA TTGTATGATG AGCTTGATTA TGCTTATAGG
CTGGAAGTAC ATAAAAAAAT TATACAAAGA ATAAAAACAA AAAAAACAAT AAATATTAAT
GAGTTTATCT GGCATGCAGA AAAATCGGAA TTATTTGAAG AAGCGGTTAA TTATTGTATA
AAATATAAAG ACAAGATAAA AAAACAATGC ACTCATATAG CTTATATAGA GATATTTGAA
AAAGTCTATT TGTTTGTCCC AAATACCGAC AAAAACAGTA AACTTGATAT ACTCCTCATT
CTTGCAGAAT CATATTTAGA AAATGAAGAT ATGATAGGAT GCAGAAAGAA AATAGAGATA
GCCGAAAAAA TAATTAGCAA CTTCGATTCA AACAAAATAG CAGCAGCACA AGTTCTTATA
ATAAAAGCAA TTCAAGAAAT TCAATCTAAT GAAAAATCTG AACAAATAGC GAAATCATTA
GCTACAGCCA AAAAGTTTAC AGCCGAAACA AATGATACTT ATACTCAATT ATTACTTGAT
AAAGCGAAAA TAGCATTTTT ACAGTATAAT AAAAAATATG CTGAAGCCGC CGATGAAGCA
AAAAAAATTA TATTAAAGTG CGGTAATTCA AAGGAATTTA CATCGCTCAA AACAAAAGCA
CTATTAAATC TGGGTACAAA TCTTCTATAT TCAGGCAACT ATAAAGAGGC AGAAAGGACT
TACTTGGAAA CTCTTAGAAA TGCAAAAAAA ATAGGCAATA CAAATATTGA AGATACTGCA
TGCAATAATC TGGCAGTCAT CCAAGAACGA GCATACAAAA ACTTTGATGC ATCAGTAGTA
TATTATGAAA GAATTTTAAA AAACAATAAT GTATCGGGTA ACACTGTTGC AGAAATTCTA
GCATTACTTA ATTTAAGCGT CGCCTATTTA CATTTATTTA ATTATGAAAA GGCCTACGAG
GCCTGCAATC AGTCTATAAA AAAAATGATG CAAAATTTTG ATACAGATAG AATATTTTTT
GCTCACACTA TTATTTATGA AATTTATCTG TCACTATGTA TGTATGACAA AGTGGATGAA
TCCGAATTGG AAATATCGAA GATACTTAAA AATAAAAGCA TATACAAAGA TCCGCTCGAT
ATAAGTATTT TTAAACAAAC AAAGAGAAAC TTTTACTATG CCATGGGACA TTTTGAAACT
GATATCGAAA TTTTTGAGAA AAATGTCGAA TATCAAAAAG ATGTTAAAGA TCTTTTAGAG
GTTTTTTCAT CATTGTGCAT TACTTTAAAT GAAATTGCAG AAGGCAAAAT AAATTCAATT
GAAAAACTCG AAGAAGAACT CTTGGTAATA ACCTCAACTC AAGTATTTTT AGAAAGAATA
TATCTTTTGT TTTATGAGTT AGTCTATCTT ATAAGAAAAA TTATCATATT CCGTTCTGAT
ATTGATTTTA AAAAAATAGT TAAAATTATA CTTGGAATAA ATTGCCACAG TAATCAACCT
TTAATAAAGG CTCCTCTTTT ATTTTTAGAA GCCTATATAT ATCCTGAAAA TTCGGAAAAA
AAACTGACAG AAGCCTTGTA TCTTCTTGAA AATAAATACA TGACGGATTT AAGTATAGAT
ATAAATATTA AGCTTGGGAT GATCCATTTG AAAAAAAATA ATATTAACAT GGCAATGATT
AACTTTGTTG AAGCTCAGAA ATTAATTAAT ATTTTTATAA AAAAAATACC GTTAAAATTC
AAAGCAAGTT ATTTTAATTC TCACCACTAC GGATTACCTT CATTGATAAT AGACGATTAT
ATCAACAGAA AAATAAAACC TGAATATACA AAATTTAACG AACTATTATC CTATAAACAG
ATAGCAAAAC TTTTATCCAA AAATGCTGTC GAAAAATTAA AAAATAATCC GGCTTTTATT
TTTAATATTA TATCGCAAAC AAAACAATCC GGTATATTTA AAAATAAGTC TATTGATGAC
ATAATAGAAA AATTTTCAGA TGATTTTTTA CAAAATATAA ACAACCTTCT AAATTTTACG
GCTTTAAATT TACTTGCAAA TGCGGCTGAT GTATTTATTA CGACAACCAA TGATAAAATT
GAATCCTTAT TTAATTTCGG TCAAAATAGA ACTATAGAAA AAATTGCAAG ATTAATAGAA
TCATCTACAT ATAATACGGT AAATATTAAA ACAGAAAGCG AAATTTCGTC ACACCTTGTT
ATTCCGATAA ATTCTTATAA TCATCAAACA GGAAATACTG TAACAGGTTA TTTGGTTTTT
GTATCAAATA AAGAAATAAA TAACTTCGGC AATTTTGGAA TACGTTTCTG CCTAAACATT
GAAAATATAT TTTCATTTTT AATAGAAAGT TATAAGGTAC AACAGGAAGC AGCTACAGAT
AAACTGACAT CGGCACTCAC AAAAAAATAC ACTGAAAATG CATTAACCGA TATTTTAAGG
GCTTCCAAAA TAAGTAACAG CTCGTTCAGT ATCCTAATGT ATGATCTGGA TAAATTTAAA
AAAGTAAACG ACACCTTCGG GCACCAGATG GGTGATACGG TTTTAAAAGC GACAGCTAAA
ACTGCATTGG GTGTATTAAA AAAAGGACAA ATACTCGGAC GAGTCGGCGG AGAAGAATTT
GTTATTCTAC TCCCGAATAC GGAAAAAAAA CAAGCTTTAA TAATAGCAGA AAAAATCAGA
AAACAAGTAG AAGCGTTGCA TTTTGATAAT CCGGCTATTA GGATAACTAT CAGCATGGGT
ATAGCTGTAT TTCCCACACA TGGTACAGCA GAAAAAGATC TATTGTCAAA AGTAGACCAA
GCCTTATATG CTGCAAAAAA TTGGGGAAGG AATCAAACAG TCGTATGGGA AGAAGATCTT
GAATCTATCA AAAAAAAGGC AGATAGGTTA GCCGGAATAT TAACAGGCAA TACCATAAAC
GATACAAAAA ATATTCTAAG CTTTATCGAT ACGGCTTCAC TCATACGGCA TTCCATATCA
AAAACACAAA GGCTCGAAAT TTGTCTTGAA AAAATAATAG ACAGTACAGG CGCCGATTCA
GGAATCTTTA TATGCCCTGT CAAGGAAAAG AGGCCTAAAA GAATCTTTAA ATATAAACCT
GTTTCAAAGC TGGAATTTCC CGTAAATAGA GACTTTATAA TCGAAGTTAT GTCCGAAAAA
AAAGAGCTAT GCAAAATAGA CTGGGAAAAC ATTTCGGGAA GAAGCGCTAT AACGGGAATC
CCCAACTGGA ATTCTACCAT TCTTGTACCT GTAATCCTAA AGGATGAAAT AAAGGCTATA
ATCTATCTTG TAGTTGAAAT CAGAAAAAGA AAGTTCGGAA CGGAAGAGGT AAACTTAGCA
AGTCTATTTG CCGGCTTAAT TGCTCCATTC TTTTAA
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| Protein sequence | MDVYYIPNLN NIDDITFILY LIKSLFLKNS LIQKDHEKKL TSIIDALKSE IEINEDIQRI
KALKYKLINL ITGLILENAL SQPIVFIIDD IHLISEFITK AILYLTIENS DKKNIILIQS
ANESLINNNQ NAKTLIKTLS NQTSIKKINL QSLSEAETEA LIRNTINIRN IPEILLKKIY
SNTSGNPLFI NEALKELTIS GELKKDKSME LCKLSDRLSN PSIPIPISTN IQQSVRKQIK
NLNKDELHFL KDLCIFQTSF KAESLPKMLN VTDSDVKKYI PKLLEQNIIK KTTKQHANEY
SIINKILQKT LYDELDYAYR LEVHKKIIQR IKTKKTININ EFIWHAEKSE LFEEAVNYCI
KYKDKIKKQC THIAYIEIFE KVYLFVPNTD KNSKLDILLI LAESYLENED MIGCRKKIEI
AEKIISNFDS NKIAAAQVLI IKAIQEIQSN EKSEQIAKSL ATAKKFTAET NDTYTQLLLD
KAKIAFLQYN KKYAEAADEA KKIILKCGNS KEFTSLKTKA LLNLGTNLLY SGNYKEAERT
YLETLRNAKK IGNTNIEDTA CNNLAVIQER AYKNFDASVV YYERILKNNN VSGNTVAEIL
ALLNLSVAYL HLFNYEKAYE ACNQSIKKMM QNFDTDRIFF AHTIIYEIYL SLCMYDKVDE
SELEISKILK NKSIYKDPLD ISIFKQTKRN FYYAMGHFET DIEIFEKNVE YQKDVKDLLE
VFSSLCITLN EIAEGKINSI EKLEEELLVI TSTQVFLERI YLLFYELVYL IRKIIIFRSD
IDFKKIVKII LGINCHSNQP LIKAPLLFLE AYIYPENSEK KLTEALYLLE NKYMTDLSID
INIKLGMIHL KKNNINMAMI NFVEAQKLIN IFIKKIPLKF KASYFNSHHY GLPSLIIDDY
INRKIKPEYT KFNELLSYKQ IAKLLSKNAV EKLKNNPAFI FNIISQTKQS GIFKNKSIDD
IIEKFSDDFL QNINNLLNFT ALNLLANAAD VFITTTNDKI ESLFNFGQNR TIEKIARLIE
SSTYNTVNIK TESEISSHLV IPINSYNHQT GNTVTGYLVF VSNKEINNFG NFGIRFCLNI
ENIFSFLIES YKVQQEAATD KLTSALTKKY TENALTDILR ASKISNSSFS ILMYDLDKFK
KVNDTFGHQM GDTVLKATAK TALGVLKKGQ ILGRVGGEEF VILLPNTEKK QALIIAEKIR
KQVEALHFDN PAIRITISMG IAVFPTHGTA EKDLLSKVDQ ALYAAKNWGR NQTVVWEEDL
ESIKKKADRL AGILTGNTIN DTKNILSFID TASLIRHSIS KTQRLEICLE KIIDSTGADS
GIFICPVKEK RPKRIFKYKP VSKLEFPVNR DFIIEVMSEK KELCKIDWEN ISGRSAITGI
PNWNSTILVP VILKDEIKAI IYLVVEIRKR KFGTEEVNLA SLFAGLIAPF F
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