| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2580 |
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| Symbol | |
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| ID | 2741284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 2605586 |
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| End bp | 2610910 |
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| Gene Length | 5325 bp |
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| Protein Length | 1774 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 637161473 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_973178 |
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| Protein GI | 42528080 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.386865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGATCA TCAATAGTCG ATACAAGATT ATTAAAAAAA TAAGCAACTC AATGCCTTAT
GTGCAGGAAT TTCTGGCCGC AGACTTATGG TCGGAAAGCA AAAAAATCAA CTTAAAAATT
GTATCATCCC TAGAGCTAAA AAAAGAAGTA CTTGATTTTT TTAAAGACAA TTTTATTACC
ATAAGCACTA TCGATAATTA TTTTCATCTT AAAAATTACG GATTTTCCAG TTTATACTTG
TCCTACCCTT CCTTGCCCCA TTCAAATCCC GATGAAATTT TATATATTTT CACTACTGAG
CATCTTGAAA ATGCAGTACC GGTTTTTGAA TTTATACAAA AATGTTCAAT GGAGGATATT
CTCAAAATCG TCGTATCGGT ATGCCAGAGT CTTGTTCATG CGAGTAACAT TGGATTTGAG
TATGAGATGT TCGCTCACGA TAATGTAATG ATAGTCAAAG AAAAAGACGA TTTTACAGTC
AGAATAAAGG ATATCGTGTC GGCGAAACTT GAAAACAGCA CATCAATACG GTTTAACGAG
ACCAAAGATT ACACGGAAAC CAATGAAAAT ATAGATACCG TTATTTCTTT TATAGTTACA
CTTCTTGCAG GACAAGAACT TAAAACAAGC GTTTCATCTA CGCTTACCAA ATTAAAAACG
GTTTATAAAA ATAAAAAGTT TAATAAAAAA AATGAAGATA TTTTTACAGC ACTATATGAA
ATAGCAAAAA AATACATTCA TCATAAAGAT AAAAATCAGA AAATTAGAAT ACACACCATA
ATTCAAGATA TAAATAGAAA ACTTAATAGA AACTACCTTG CAGATATTAT TCTGCCCCTT
AACAGTATAA CTTTCCGTCC TAAAATAGTA GGAAAACAAA AAGAAATAAA TATGGTATCG
CAGGCCAGAG TTGAGATACA GTCAAGAAAG GCAAAGAAAC AGGTATTTCT TATCAAGGGT
ACTCAGGGGA CAGGTAAAAC AAGGTTTTTA AAAGAAGCCG AATACCGTTT AGCCTTAGAA
AGGACAAATA TATATGCTAA TTATAATTTA AGGAATTCCA GTCCGGATCA ATTTTGGGAT
GACTTTTTAG GAAAAATATT CTTAAATTCA TATTCGGCCC AAGATATGGA TGAAAGAGAA
AATCTAATAA AAAATACAAA ACTAATACGG GATCGTAAAC TTGCCATTAA TACGGAAAAA
GAATATGATT ACATGAAGTT TAAACTTTTT AATGAAGGGA AAAACTTATT TTTTAAAACA
ATCGGACAAC TGCCTGTATT CCTAATTATA GATGATGTAG AATTCGCAAA CGATTTTATG
CTGGATACGA TTCTATATTT AGCCACTGAA ATTACGGAGC TTGAAAGATT TGGAGTTATT
TTGTCTTATG ATGAAGCTGT CACCCCTGTT TCACCTAAAT TCGAATCTTT TTTAAACATC
TTGAACAATT ATGAAAAATG TCAAACTTTT GAACTAAATT ATTTTTCAAA AGAAGAAACC
ATAGAGATGT TAAAAAATAT CATGCTATTA AAATATCTTC CTTTAAGTTT TGGTCCTGTC
CTATATAAGC ATACATCAGG TTGTCCATCT TTTATTATTG AAATGATAAA AGAATTTGTC
AATGCCGGAA CAATATACAG GGACAAGCTG ACAGGCTTAT GGCTCATTAA GGAGGAAATA
TACAATGAAA AACTTCAAAA TAGAATACCA AAATCGATTG AAGAAGTTTT AACCAATCAA
TTAAATGTTC TTTCCCCAAG CGAGAAAAAA GTATTTCTTG AAGTATCCTT ATTTCAAAAC
AAGTTCAAAA TAGAATATTT ATATAAGATT CTATCTATGT CGCCAAAACA AATAGATAAA
AATATAAATA AACTTATAAA TAAAGGTTTG ATCACCGTTA TAAAGACAGG AGACAAACTG
GAATACACTA TTACCAATAA AATTATGCAT AATATTTTGT ATCAAATGGT GCCGCCTAAG
AATAAAATGT TACAGCATAA AAAAATAAGT CAAATTCTTC AAAAGGAACC CGATACTGAT
GTAAATGAGC TTATTTGGTA TCTAAAAGAA TCGGGGAATA AAAAGGCTGC ATTAAACTAC
TGTCTGGATA TAGTGAATAA AAATATGAAG GAAAAAAATC CGGACGCTGC AATAAAAATT
TACGAAAAGA TTACTTCAAT GATATCCGGT CAAAGCACAA AGGCTAAATT TCAGATCCTC
TTAAAAATAT TCGAACTATA TAATCAGATG AATATTACAA ATAAGGAAGC GGAAATTATA
TTAAGCCTTG AAGAAATGTT GCCTAAAATA AAAGATGCAA ATCTTTTGTC GTGCTATTAC
AATTTAATGG CTAGGTATGA GTACGAAACT TCAAATGAAG AAAAAGTTAA TTTTTATGTA
AACAAACTGG CGGAATTACA TACAAAAATA TCTAAAGATA TAGTAAATCT AAGATTACAA
CATGCAAAGT GTTTATACTA CCATTTAAAA CGGCAATATC GTGATTTTAA AGAATCTACT
CATAAAATAT TTAATCTAAC AAAAAACCGG TCTGAATATA TTAGCTATAG AACTGAAGCT
TATATATTCT TAGGATATCT TTATGATAAA AAAAATAAGA AGAAAGCATC TTTTAAATGC
TTTCAAAAAG CAAAAGAGCT TTCATCTTTA TCTAATAATA TAAAAACAGA ACTTATTTCA
ATGTATAATA TCTCGATAAT GCATTGGAAG AGATATTCAA ATATTGAAAA GACTCTCACA
TATACAAAGA ATGTTATAAG TTTGGCCAAA AAATTAGGAT TTTTGACTAT TGAAACTGTT
TCCATAATTA ATTATGCACG AATGTTAAGT GAAATTCAAA GCAACCATGA AGCGTATGAA
TATGCAAAAG AGGCAGAGAA CAAAATACTT GCCAATAACA TGGTAATGCT AAAGATTCCA
TGCATTACAA CACTTATGGA GATAACCCAA AACTTAAGTA GATATAAAGA ATTTTGCGAG
TATAGAAAAG AATATATAAA AACAGTACGA GAAAACAAAA AAAAGTCTGC GAACCAGCAT
AATTGTGTAT TTTATGTTAT CATGGCAAGA ATGTACCAAG AATTCGGATA TACCAATAAG
GCAATTGTCT GTTTACAAAG AAGCATAAAG CTAAAAAAAC ATCTGCCGGA TCATCAACTA
TTTATAGTAT ATTTTATGCT GGAAACATTA CGAATCATTC AAAGAAAAAA ATCCGATATA
AATAATTTAA TAAAAATCTT TAACTTATAT ATAAATATAA AAAATTATAG CACAAAAAAT
ATAAGACAGC TTACCAAAAA CTTCTTTGAT ACACTCATTA CTGCGACTAT AAAACGACCT
GATATTGATT TTACTCCATT AATACTACAG ATAGTAAAAT TCAATATGCC CGATCTATAT
GATTTTCAGC AGTCAGGAAT GAACTATTTA AATATATATT TAAACAAAAC AGAGACAGAA
CATATCTTAC AAGAAAATCT TCAACTCATT AAACCTAAGA AGTTGATAAA TATTGCATTA
TTCCTTAATA TGACATTAGG TGATTACTAT TATGCTGCCG GAATCCAAAA CCTGGCCATT
ATATACTATC TGGAAGCTCA AAACAAAATA TTAGAAATAC TAAAAAATAC CCCTGAAAAA
TGCAAGGCAA GATTATTTAA TAATTGGCAA TTTAATAGGG CATTCGATAT AGTTTCAGAC
TTTATAAAAG GGAAGCCTCT GCAAAAGGAA AAAAGATATA ACCAAAAGAC AACCAATTCA
GAACTAAAAG AAATCTTAAA ATCTAAACAT ATAAATATCA TAAAAAAAGA TAAAAACTTA
AAAAACAAAT TAGTACAAAC CTTTCTAAAA AATGAAGGTT ATGAACACAT CTCACCGGTT
GAAATCGTTA ATAATTTTAC CGATAACTAT ACACAAAATA TATCGGAAAT AATGAAATTC
TTAGCTTTAA ATATAATCGC CACATCCTAT GATTTTTTAG AAATAAGTAC ATCGGGCAAA
CCGTCTTTTA TCTTACACAA CGAAGATCAA AACAAAGATT TACAAAACAT ATTTGATTTT
ATAATAAAAT TCGGATATCA AAACACAGCT AAAATAGAAA CCATATTACA GAAGCCATGC
ATGGTGATTC CGGTTAATAA AAAGAATTTC GGATCAAATC ATTATAAACT TTTAGGGTTT
ATGGTTTTTA TATCGGAAAA TGTAATAAAT GATTTTTCAC AGGAAGGAAG ATATTTTTGT
AAAAAGCACT CCAACCTTTT AACATTGCTT GTCGAAAGTA AACGATTTCA ACAATCAGCA
TCATATGATA CTTTAACCGG GGCCTATACA AGAAAATATT TTGAAGTTTT TTTCAAAAAT
ATTATCAAAA ACTTATATAA CTCAAATTCC AAATTCTCCC TTATTTTATA TGACTTGGAT
AAATTCAAAA ATATAAATGA TACCTATGGA CATCTTGTAG GCGATATTGT TCTTAAAAGA
GTAACTCAGA CTATTTTAGA CTCCTTAAGC CAAGGGCAGA TATTGGGAAG ATATGGTGGT
GAAGAATTCA CTGTCATTCT ACCCGATACG GACTCACAAA AAGCCTTAAA AACAGCCGAA
TATTTTAGAA AAAAAATAGA AAACTTGGTT TTTACGGAAT TCGATACAGC CATAACAATA
AGCCTTGGGA TTGCAACCTT TCCCGAACAC GGAAAAACGA CTTCAGAGCT GCTTTCAAAT
GCGGATCAAG CCTTATACCA CTCCAAAAAT ACAGGAAGAA ATAAAAGTAC CGTATGGGCA
CCGTCTATAA TTAATAAAAA GGAAACAAGC CAAGCCGCTG TTATTATAGC TGATGAATCT
TCTTTTAATG AGAATATATC CGCAACAATA GAATTATGCG ATATATTAAA AACAAATATT
AAAAAAACAG AGCTATCAAA AACTTTAATA TCAAAAATAA TAAAATTCTT TGAAGCCGAG
AGCGGAGCCA TTATTCTTAA ATCCAAGAAT AAAAAAAATA ACGAATTAAA TTTTAAAATT
AATGCAAAAA TAGGGTTTGA ATCTTATCCG ATCAATTACC AGTTGGTCCA CACGGTTACT
GAGGACGGCA CGGGTATTTA CCAAGTGGAT TGGGATTCAA TAGCAAAAAG AAACAGCATA
ACCAATATGC CGGAATGGAA TTCCGTAATG ATCGCTCCTA TAATCAAGAA TGAGGCTATC
ATAGGAGTAT TTTATTTGGC GGCTCCCGAA AAGCATGTCA AATTTAACCT AAATAAATTT
ATTTTTTTTA CATTTTTAAC TGATATAATA TCTGCAAATA TATAA
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| Protein sequence | MEIINSRYKI IKKISNSMPY VQEFLAADLW SESKKINLKI VSSLELKKEV LDFFKDNFIT
ISTIDNYFHL KNYGFSSLYL SYPSLPHSNP DEILYIFTTE HLENAVPVFE FIQKCSMEDI
LKIVVSVCQS LVHASNIGFE YEMFAHDNVM IVKEKDDFTV RIKDIVSAKL ENSTSIRFNE
TKDYTETNEN IDTVISFIVT LLAGQELKTS VSSTLTKLKT VYKNKKFNKK NEDIFTALYE
IAKKYIHHKD KNQKIRIHTI IQDINRKLNR NYLADIILPL NSITFRPKIV GKQKEINMVS
QARVEIQSRK AKKQVFLIKG TQGTGKTRFL KEAEYRLALE RTNIYANYNL RNSSPDQFWD
DFLGKIFLNS YSAQDMDERE NLIKNTKLIR DRKLAINTEK EYDYMKFKLF NEGKNLFFKT
IGQLPVFLII DDVEFANDFM LDTILYLATE ITELERFGVI LSYDEAVTPV SPKFESFLNI
LNNYEKCQTF ELNYFSKEET IEMLKNIMLL KYLPLSFGPV LYKHTSGCPS FIIEMIKEFV
NAGTIYRDKL TGLWLIKEEI YNEKLQNRIP KSIEEVLTNQ LNVLSPSEKK VFLEVSLFQN
KFKIEYLYKI LSMSPKQIDK NINKLINKGL ITVIKTGDKL EYTITNKIMH NILYQMVPPK
NKMLQHKKIS QILQKEPDTD VNELIWYLKE SGNKKAALNY CLDIVNKNMK EKNPDAAIKI
YEKITSMISG QSTKAKFQIL LKIFELYNQM NITNKEAEII LSLEEMLPKI KDANLLSCYY
NLMARYEYET SNEEKVNFYV NKLAELHTKI SKDIVNLRLQ HAKCLYYHLK RQYRDFKEST
HKIFNLTKNR SEYISYRTEA YIFLGYLYDK KNKKKASFKC FQKAKELSSL SNNIKTELIS
MYNISIMHWK RYSNIEKTLT YTKNVISLAK KLGFLTIETV SIINYARMLS EIQSNHEAYE
YAKEAENKIL ANNMVMLKIP CITTLMEITQ NLSRYKEFCE YRKEYIKTVR ENKKKSANQH
NCVFYVIMAR MYQEFGYTNK AIVCLQRSIK LKKHLPDHQL FIVYFMLETL RIIQRKKSDI
NNLIKIFNLY INIKNYSTKN IRQLTKNFFD TLITATIKRP DIDFTPLILQ IVKFNMPDLY
DFQQSGMNYL NIYLNKTETE HILQENLQLI KPKKLINIAL FLNMTLGDYY YAAGIQNLAI
IYYLEAQNKI LEILKNTPEK CKARLFNNWQ FNRAFDIVSD FIKGKPLQKE KRYNQKTTNS
ELKEILKSKH INIIKKDKNL KNKLVQTFLK NEGYEHISPV EIVNNFTDNY TQNISEIMKF
LALNIIATSY DFLEISTSGK PSFILHNEDQ NKDLQNIFDF IIKFGYQNTA KIETILQKPC
MVIPVNKKNF GSNHYKLLGF MVFISENVIN DFSQEGRYFC KKHSNLLTLL VESKRFQQSA
SYDTLTGAYT RKYFEVFFKN IIKNLYNSNS KFSLILYDLD KFKNINDTYG HLVGDIVLKR
VTQTILDSLS QGQILGRYGG EEFTVILPDT DSQKALKTAE YFRKKIENLV FTEFDTAITI
SLGIATFPEH GKTTSELLSN ADQALYHSKN TGRNKSTVWA PSIINKKETS QAAVIIADES
SFNENISATI ELCDILKTNI KKTELSKTLI SKIIKFFEAE SGAIILKSKN KKNNELNFKI
NAKIGFESYP INYQLVHTVT EDGTGIYQVD WDSIAKRNSI TNMPEWNSVM IAPIIKNEAI
IGVFYLAAPE KHVKFNLNKF IFFTFLTDII SANI
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